A B C D E F G I M N P S T X
All Classes All Packages

A

addAdditionalData(String, int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

addFeature(ConcreteFeature) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

Adds a ConcreteFeature to the List of ConcreteFeatures

addFeature(FeatureTemplate) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

adds a FeatureTemplate to the List

additionalData - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

addPartOfDocumentText(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

addPartOfDocumentTextXPath(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler

addVauleMapping(String, String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

Adds a ValueMapping to the Template

addXPath(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

B

buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.FSArrayBuilder

buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.MedlineTextSentenceBuilder

buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.StandardTypeBuilder

Instantiates a UIMA type object belonging to the class given by ConcreteType.getFullClassName().

buildType(ConcreteType, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.typeBuilder.StringArrayBuilder

buildType(ConcreteType, JCas) - Method in interface de.julielab.jcore.reader.xmlmapper.typeBuilder.TypeBuilder

builds a concrete Type to a subtype of TOP, by using reflection

C

clone() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

clone() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

ConcreteFeature - Class in de.julielab.jcore.reader.xmlmapper.genericTypes

Represents a Feature of an Type from the (user-defined) UIMA TypeSystem with a concrete value.

ConcreteFeature(FeatureTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

Creates an new Instance of a ConcretFeatured based on a Feature Template

ConcreteFeature(TypeTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

Creates an new Instance of a ConcretFeatured based on a Type Template

ConcreteType - Class in de.julielab.jcore.reader.xmlmapper.genericTypes

Represents a Type form the (user-extended) UIMA TypeSystem that has features with concrete values (ConcreteFeatures).

ConcreteType() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

Deprecated.

ConcreteType(TypeTemplate) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

Creates a new Instance of a ConcreteType on the base of a TypeTemplate

createTemplates() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory

*

D

de.julielab.jcore.reader.xmlmapper.genericTypes - package de.julielab.jcore.reader.xmlmapper.genericTypes

de.julielab.jcore.reader.xmlmapper.mapper - package de.julielab.jcore.reader.xmlmapper.mapper

de.julielab.jcore.reader.xmlmapper.typeBuilder - package de.julielab.jcore.reader.xmlmapper.typeBuilder

de.julielab.jcore.reader.xmlmapper.typeParser - package de.julielab.jcore.reader.xmlmapper.typeParser

DocumentTextData - Class in de.julielab.jcore.reader.xmlmapper.mapper

DocumentTextData() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

DocumentTextHandler - Class in de.julielab.jcore.reader.xmlmapper.mapper

Handels to parse the DocumentText

DocumentTextHandler() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler

DocumentTextPartParser - Interface in de.julielab.jcore.reader.xmlmapper.mapper

E

ELEMENT_DAY - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

XML element nested in ELEMENT_PUB_DATE

ELEMENT_MEDLINE_DATE - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

XML element, alternative to elements ELEMENT_DAY, ELEMENT_MONTH, ELEMENT_YEAR

ELEMENT_MONTH - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

XML element nested in ELEMENT_PUB_DATE

ELEMENT_YEAR - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

XML element nested in ELEMENT_PUB_DATE

EntityParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

A special XML mapper parser capable of parsing the IeXML in-line XML annotations used in the CalBc and Mantra projects.

EntityParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser

equals(Object) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

externalParser - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

F

features - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

FeatureTemplate - Class in de.julielab.jcore.reader.xmlmapper.genericTypes

Represents a Template for a Feature which contains all necessary Informations to build a concrete Type.

FeatureTemplate() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

FSArrayBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder

The builder fotr FSArrays.

FSArrayBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.FSArrayBuilder

FSArrayParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

Handels to parse a FSArray Type from a TypeTemplate to a ConcreteType

FSArrayParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser

fullClassName - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

G

get(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

getAdditionalData() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

getBegin() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

getBegin() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

Returns the very beginning of the document part, i.e.

getBeginOffsets() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getConcreteFeatures() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

Returns the list of ConcreteFeatures

getDocumentTextParser() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory

getElementFragmentString(VTDNav) - Static method in class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils

Returns XML fragment corresponding to the XML element vn points to.
This fragment is represented by the exact bytes of the underlying XML text document corresponding the XML element where vn is positioned.

getElementText(VTDNav) - Static method in class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils

getEnd() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

getEnd() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

Returns the very end of the document part, i.e.

getEndOffsets() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getFeatures() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

getFullClassName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

getId() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getMappedValue(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

returns a mapped Value for a spezific value from the xml

getOffsetPartIDs() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

returns the first and the last of partOfDocument ids that should be covered by this annotation; that is, the begin of this annotation should be at the begin of the first returned part and the end should be the end of the second returned part.

getParser() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

getParser() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getParts() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

getText() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

getText() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getTsName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

getTsName() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

getTypeBuilder() - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser

getTypeBuilder() - Method in interface de.julielab.jcore.reader.xmlmapper.typeParser.TypeParser

getTypeTemplate() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

getValue() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

Returns the Value of a ConcreteFeature

getValueMap() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

getXPath() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

getXPaths() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

I

inlineAnnotation - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

isInlineAnnotation() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

isMultipleInstances() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

isType() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

isType() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

M

MapperUtils - Class in de.julielab.jcore.reader.xmlmapper.mapper

Some utility methods like string transformations.

MapperUtils() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.MapperUtils

MedlineTextSentenceBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder

TODO insert description

MedlineTextSentenceBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.MedlineTextSentenceBuilder

multipleInstances - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

N

NoDocumentTextCoveredException - Exception in de.julielab.jcore.reader.xmlmapper.typeParser

This exception expresses the case where an annotation should cover a part of the document text, but the referenced part is empty.

NoDocumentTextCoveredException() - Constructor for exception de.julielab.jcore.reader.xmlmapper.typeParser.NoDocumentTextCoveredException

P

parse(byte[], byte[], JCas) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper

parse(File, JCas) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper

parses the File to the jcas

parseAndAddToCas(VTDNav, JCas, byte[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler

parseDocumentPart(VTDNav, PartOfDocument, int, JCas, byte[]) - Method in interface de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextPartParser

parseDocumentPart(VTDNav, PartOfDocument, int, JCas, byte[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser

parser - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

parseSingleType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

parseStandardFeature(ConcreteType, VTDNav, FeatureTemplate, ConcreteFeature) - Static method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.EntityParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.FSArrayParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser

parseType(ConcreteType, VTDNav, JCas, byte[], DocumentTextData) - Method in interface de.julielab.jcore.reader.xmlmapper.typeParser.TypeParser

Parses a Type.

PartOfDocument - Class in de.julielab.jcore.reader.xmlmapper.mapper

PartOfDocument(int) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

partOfDocuments - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

PATTERN_DAY - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

Pattern for PubDate day

PATTERN_MONTH - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

Pattern for PubDate month

PATTERN_MONTH_CONTEXT - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

Pattern for the context of PubDate month

PATTERN_YEAR - Static variable in class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

Pattern for PubDate year

PubDateParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

A Medline TypeParser for the PubDate

PubDateParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.PubDateParser

put(int, PartOfDocument) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

S

setBegin(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

setBeginOffsets(int[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setEnd(int) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

setEndOffsets(int[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setExternalParserForPartOfDocument(int, String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler

setFeatures(List<FeatureTemplate>) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

setFullClassName(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

setId(int) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setIgnoreTrivialWhitespaces(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper

Whether or not to ignore trivial XML whitespaces and newlines according to VTDGen.enableIgnoredWhiteSpace(boolean).

setInlineAnnotation(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

setMultipleInstances(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

setParser(DocumentTextPartParser) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setParser(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

Overrides the parser and sets an external parser

setText(String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

setText(String[]) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setTsName(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

setType(boolean) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

can mark the feature as a type.

setTypeTemplate(TypeTemplate) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

setValue(String) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

Sets the value of a ConcreteFeature

setValueMap(HashMap<String, String>) - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

setxPath(String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.PartOfDocument

setXPathForPartOfDocumentText(int, String) - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextHandler

size() - Method in class de.julielab.jcore.reader.xmlmapper.mapper.DocumentTextData

SourceParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

Handels to parse a Source Feature from a TypeTemplate to a ConcreteType

SourceParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.SourceParser

StandardTypeBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder

In this class, the actual UIMA types are built from the templates which have been filled with values by the type parsers before.

StandardTypeBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.StandardTypeBuilder

creates an new instance of the StandardTypeBuilder

StandardTypeParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

Parses all standard Types, which does not need a special handling in parsing

StandardTypeParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.StandardTypeParser

StringArrayBuilder - Class in de.julielab.jcore.reader.xmlmapper.typeBuilder

The Builder for String Arrays.

StringArrayBuilder() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeBuilder.StringArrayBuilder

StringArrayParser - Class in de.julielab.jcore.reader.xmlmapper.typeParser

Handels to parse a StringArray Type from a TypeTemplate to a ConcreteType

StringArrayParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.typeParser.StringArrayParser

StructuredAbstractParser - Class in de.julielab.jcore.reader.xmlmapper.mapper

This class expects a MEDLINE structured abstract pointed to by the PartOfDocument given to the StructuredAbstractParser.parseDocumentPart(VTDNav, PartOfDocument, int, JCas, byte[]) method or just plain text at the XPath location.

StructuredAbstractParser() - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.StructuredAbstractParser

T

toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteFeature

toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.ConcreteType

toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.FeatureTemplate

toString() - Method in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

TypeBuilder - Interface in de.julielab.jcore.reader.xmlmapper.typeBuilder

TODO insert description

TypeFactory - Class in de.julielab.jcore.reader.xmlmapper.genericTypes

Parses the Mapping File to a List of Feature- and Type Templates

TypeFactory(byte[]) - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeFactory

creates a new instance of the TypeFactory

TypeParser - Interface in de.julielab.jcore.reader.xmlmapper.typeParser

standard Interface to define an external Parser

TypeTemplate - Class in de.julielab.jcore.reader.xmlmapper.genericTypes

Represents a Template for a type which Contains a List of Feature Templates and all necessary Informations to build a concrete Type.

TypeTemplate() - Constructor for class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

Creates a new instance of a TypeTemplate

X

XMLMapper - Class in de.julielab.jcore.reader.xmlmapper.mapper

Generic XML to UIMA TypeSystem mapper.

XMLMapper(byte[]) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper

Creates an new instacne of the XMLMapper

XMLMapper(InputStream) - Constructor for class de.julielab.jcore.reader.xmlmapper.mapper.XMLMapper

xPaths - Variable in class de.julielab.jcore.reader.xmlmapper.genericTypes.TypeTemplate

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