de.julielab.neo4j.plugins.datarepresentation.constants

Class ConceptConstants

java.lang.Object

de.julielab.neo4j.plugins.constants.NodeConstants

de.julielab.neo4j.plugins.datarepresentation.constants.NodeConstants

de.julielab.neo4j.plugins.datarepresentation.constants.ConceptConstants

public class ConceptConstants
extends NodeConstants

Nested Class Summary

Nested classes/interfaces inherited from class de.julielab.neo4j.plugins.datarepresentation.constants.NodeConstants

NodeConstants.Labels

Field Summary

Fields

Modifier and Type	Field and Description
static String	AGGREGATE Field in the input data format.
static String	AGGREGATE_INCLUDE_IN_HIERARCHY Applies to aggregate terms which are explicitly imported.
static String	COORDINATES
static String	ELEMENT_COORDINATES Field in the input data format of aggregate terms.
static String	INDEX_NAME
static String	PARENT_COORDINATES Field in the input data format.
static String	PROP_CHILDREN_IN_FACETS Property that stores for database terms, which facets define children for them.
static String	PROP_COPY_PROPERTIES Property of aggregate terms.
static String	PROP_DESCRIPTIONS
static String	PROP_DISPLAY_NAME The name which should be displayed in Semedico, e.g.
static String	PROP_FACETS
static String	PROP_MAPPING_TYPE Property for aggregates.
static String	PROP_ORG_ID
static String	PROP_ORG_SRC
static String	PROP_PREF_NAME The name by which a term should be references preferably.
static String	PROP_SOURCES
static String	PROP_SRC_IDS
static String	PROP_SYNONYMS Name other than the preferred name that mean the same thing.
static String	PROP_UNIQUE_SRC_ID
static String	PROP_WRITING_VARIANTS Writing variants of the preferred name or any of its synonyms that are not any of these names themselves but writing variants (with or without dashes, slashes, white spaces etc.).
static String	RELATIONSHIPS Field in the input data format.
static String	RS_PROPS Field in the input data format for explicit term relations.
static String	RS_TARGET_COORDINATES Field in the input data format for explicit term relations.
static String	RS_TYPE Field in the input data format for explicit term relations.
static String	SET_INDEX_NAME

Fields inherited from class de.julielab.neo4j.plugins.datarepresentation.constants.NodeConstants

INDEX_ROOT_NODES, PROP_ID, PROP_LABELS, PROP_NAME, PROP_QUALIFIERS, PROP_VALUE

Fields inherited from class de.julielab.neo4j.plugins.constants.NodeConstants

KEY_LABELS

Constructor Summary

Constructors

Constructor and Description
ConceptConstants()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROP_PREF_NAME

public static final String PROP_PREF_NAME

The name by which a term should be references preferably. This will be the standard name in the literature or the most conventionalized name or similar.

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Constant Field Values

PROP_DISPLAY_NAME

public static final String PROP_DISPLAY_NAME

The name which should be displayed in Semedico, e.g. for context disambiguation. This is used for genes, for example, where the organism is appended to the preferred name in order to distinguish between genes with the same symbol in different organisms.

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Constant Field Values

PROP_SYNONYMS

public static final String PROP_SYNONYMS

Name other than the preferred name that mean the same thing.

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Constant Field Values

PROP_WRITING_VARIANTS

public static final String PROP_WRITING_VARIANTS

Writing variants of the preferred name or any of its synonyms that are not any of these names themselves but writing variants (with or without dashes, slashes, white spaces etc.).

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Constant Field Values

PROP_DESCRIPTIONS

public static final String PROP_DESCRIPTIONS

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Constant Field Values

PROP_FACETS

public static final String PROP_FACETS

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Constant Field Values

PROP_ORG_ID

public static final String PROP_ORG_ID

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Constant Field Values

PROP_ORG_SRC

public static final String PROP_ORG_SRC

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Constant Field Values

PROP_SRC_IDS

public static final String PROP_SRC_IDS

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Constant Field Values

PROP_SOURCES

public static final String PROP_SOURCES

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Constant Field Values

PROP_UNIQUE_SRC_ID

public static final String PROP_UNIQUE_SRC_ID

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Constant Field Values

PROP_CHILDREN_IN_FACETS

public static final String PROP_CHILDREN_IN_FACETS

Property that stores for database terms, which facets define children for them. This is necessary because one facet can just be a 'view' of another facet, thus removing some of the original terms for a narrower focus. Then it could be that in one facet a particular term has less children that in another - e.g. the original - facet.

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Constant Field Values

PARENT_COORDINATES

public static final String PARENT_COORDINATES

Field in the input data format. This information is used to identify the correct parent node.

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Constant Field Values

INDEX_NAME

public static final String INDEX_NAME

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Constant Field Values

SET_INDEX_NAME

public static final String SET_INDEX_NAME

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Constant Field Values

RELATIONSHIPS

public static final String RELATIONSHIPS

Field in the input data format.

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Constant Field Values

RS_TARGET_COORDINATES

public static final String RS_TARGET_COORDINATES

Field in the input data format for explicit term relations. Coordinates of the concept that is the target of a relationship.

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Constant Field Values

RS_TYPE

public static final String RS_TYPE

Field in the input data format for explicit term relations. Specifies the type of the relationship.

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Constant Field Values

RS_PROPS

public static final String RS_PROPS

Field in the input data format for explicit term relations. Specifies a number of properties to add to the relationship.

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Constant Field Values

AGGREGATE

public static final String AGGREGATE

Field in the input data format. Indicates whether a term is actually an aggregate term, representing a whole set of real terms. This could be done for terms with equal names to create a single representative with all necessary information to come back to the original terms, for instance.

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Constant Field Values

AGGREGATE_INCLUDE_IN_HIERARCHY

public static final String AGGREGATE_INCLUDE_IN_HIERARCHY

Applies to aggregate terms which are explicitly imported. If set to true, they may be nodes embedded into a hierarchy and thus be 'broader than' other terms and be root terms of facets.

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Constant Field Values

ELEMENT_COORDINATES

public static final String ELEMENT_COORDINATES

Field in the input data format of aggregate terms. Specifies the term source coordinates - source ID and source - of element terms.

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Constant Field Values

PROP_COPY_PROPERTIES

public static final String PROP_COPY_PROPERTIES

Property of aggregate terms. Specifies an array of property names to be copied from element terms.

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Constant Field Values

PROP_MAPPING_TYPE

public static final String PROP_MAPPING_TYPE

Property for aggregates. The value of the property exposes information about the exact set of mapping types allowed to create the aggregate.

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Constant Field Values

COORDINATES

public static final String COORDINATES

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Constant Field Values

Constructor Detail

ConceptConstants

public ConceptConstants()