edu.umd.hooka.alignment

Class AssociationScoreTools

java.lang.Object

edu.umd.hooka.alignment.AssociationScoreTools

public class AssociationScoreTools
extends Object

Constructor Summary

Constructors

Constructor and Description
AssociationScoreTools()

Method Summary

Methods

Modifier and Type	Method and Description
static double	computeLLR(int countEF, int countE, int countF, int N) Computes the log-likelihood ratio
static double	fishersExact(int countEF, int countE, int countF, int N)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AssociationScoreTools

public AssociationScoreTools()

Method Detail

computeLLR

public static double computeLLR(int countEF,
                int countE,
                int countF,
                int N)

Computes the log-likelihood ratio

Parameters:

countEF -

countE -

countF -

N -

fishersExact

public static double fishersExact(int countEF,
                  int countE,
                  int countF,
                  int N)