A B C D E F G I L M P R S T V W

A

addDeterminants(HashMap, HashMap<DeterminantValueSet.Determinants, ArrayList<Span>>, int, int, int, DeterminantValueSet.DirectionPrefer) - Method in class edu.utah.bmi.rush.core.FastCRules

if reaches the end of one or more rules, add all corresponding determinants into the results

addRule(char[], DeterminantValueSet.Determinants, double) - Method in class edu.utah.bmi.rush.core.FastCRules

Override addRule method

AlterSentenceType - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

AlterSentenceTypeConstructor - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

autoFixGaps - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

B

begin - Variable in class edu.utah.bmi.nlp.Span

begin - Static variable in class edu.utah.bmi.rush.core.RuSH

C

clone() - Method in class edu.utah.bmi.nlp.Rule

colorIndicator - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

compareScoreOnly(Span, Span) - Method in class edu.utah.bmi.rush.core.FastCRules

compareScorePrior(Span, Span) - Method in class edu.utah.bmi.rush.core.FastCRules

compareSpan(Span, Span) - Method in class edu.utah.bmi.rush.core.FastCRules

compareTo(Span) - Method in class edu.utah.bmi.nlp.Span

compareWidthOnly(Span, Span) - Method in class edu.utah.bmi.rush.core.FastCRules

compareWidthPrior(Span, Span) - Method in class edu.utah.bmi.rush.core.FastCRules

D

debug - Variable in class edu.utah.bmi.rush.core.FastCRules

debug - Variable in class edu.utah.bmi.rush.core.RuSH

DeterminantValueSet - Class in edu.utah.bmi.nlp

This Determinants is going to be initiated dynamically in edu.utah.FastRule.java

DeterminantValueSet() - Constructor for class edu.utah.bmi.nlp.DeterminantValueSet

DeterminantValueSet - Class in edu.utah.bmi.rush.core

This Determinants is going to be initiated dynamically in edu.utah.bmi.fastruleprocessor.FastRules.java

DeterminantValueSet() - Constructor for class edu.utah.bmi.rush.core.DeterminantValueSet

DeterminantValueSet.Determinants - Enum in edu.utah.bmi.nlp

DeterminantValueSet.Determinants - Enum in edu.utah.bmi.rush.core

DeterminantValueSet.DirectionPrefer - Enum in edu.utah.bmi.rush.core

differentColoring - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

digit - Static variable in class edu.utah.bmi.nlp.SimpleParser

dot - Static variable in class edu.utah.bmi.nlp.SimpleParser

E

edu.utah.bmi.nlp - package edu.utah.bmi.nlp

edu.utah.bmi.rush.core - package edu.utah.bmi.rush.core

edu.utah.bmi.rush.uima - package edu.utah.bmi.rush.uima

edu.utah.bmi.type.system - package edu.utah.bmi.type.system

end - Variable in class edu.utah.bmi.nlp.Span

END - Variable in class edu.utah.bmi.rush.core.FastCRules

end - Static variable in class edu.utah.bmi.rush.core.RuSH

F

FastCRuleProcessor - Class in edu.utah.bmi.rush.core

This class is an extension of FastRulesProcessor, so that it supports capturing group within rule.

FastCRuleProcessor(String) - Constructor for class edu.utah.bmi.rush.core.FastCRuleProcessor

fastCRules - Variable in class edu.utah.bmi.rush.core.FastCRuleProcessor

FastCRules - Class in edu.utah.bmi.rush.core

This class is an extension of FastRules.

FastCRules() - Constructor for class edu.utah.bmi.rush.core.FastCRules

FastCRules(String) - Constructor for class edu.utah.bmi.rush.core.FastCRules

fcrp - Static variable in class edu.utah.bmi.rush.core.RuSH

featOkTst - Static variable in class edu.utah.bmi.type.system.Sentence_Type

featOkTst - Static variable in class edu.utah.bmi.type.system.SentenceOdd_Type

featOkTst - Static variable in class edu.utah.bmi.type.system.Token_Type

G

getFSGenerator() - Method in class edu.utah.bmi.type.system.Sentence_Type

getFSGenerator() - Method in class edu.utah.bmi.type.system.SentenceOdd_Type

getFSGenerator() - Method in class edu.utah.bmi.type.system.Token_Type

getRuleString(int) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

getRuleString(int) - Method in class edu.utah.bmi.rush.core.FastCRules

getScore(int) - Method in class edu.utah.bmi.rush.core.FastCRules

getTypeId(Class) - Method in class edu.utah.bmi.rush.uima.RuSHTestAE_General

Get Type System registered Id

getTypeIndexID() - Method in class edu.utah.bmi.type.system.Sentence

getTypeIndexID() - Method in class edu.utah.bmi.type.system.SentenceOdd

getTypeIndexID() - Method in class edu.utah.bmi.type.system.Token

I

id - Variable in class edu.utah.bmi.nlp.Rule

includePunctuation - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

initialize(UimaContext) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

initialize(UimaContext) - Method in class edu.utah.bmi.rush.uima.RuSHTestAE_General

initiate(String) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

initiate(String) - Method in class edu.utah.bmi.rush.core.FastCRules

Read from ruleFile to construct the rules.

initiate(String) - Method in class edu.utah.bmi.rush.core.RuSH

isPunctuation(String) - Static method in class edu.utah.bmi.nlp.WildCardChecker

isPunctuation(char) - Static method in class edu.utah.bmi.nlp.WildCardChecker

isSpecialChar(char) - Static method in class edu.utah.bmi.nlp.WildCardChecker

L

letter - Static variable in class edu.utah.bmi.nlp.SimpleParser

M

main(String[]) - Static method in class edu.utah.bmi.rush.uima.RunUIMAJcasGen

maxRepeatLength - Variable in class edu.utah.bmi.rush.core.FastCRules

method - Variable in class edu.utah.bmi.rush.core.FastCRules

mt - Variable in class edu.utah.bmi.rush.core.FastCRules

P

PARAM_ALTER_SENTENCE_TYPE_NAME - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

PARAM_FIX_GAPS - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

PARAM_INCLUDE_PUNCTUATION - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

PARAM_PRINT_SPAN - Static variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

PARAM_PRINT_TEXT - Static variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

PARAM_RULE_FILE - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

PARAM_SENTENCE_TYPE - Static variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

PARAM_SENTENCE_TYPE_NAME - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

PARAM_TOKEN_TYPE_NAME - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

pdigit - Variable in class edu.utah.bmi.rush.core.FastCRules

printSpan - Variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

printText - Variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

process(JCas) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

process(JCas) - Method in class edu.utah.bmi.rush.uima.RuSHTestAE_General

processRepetition(char[], HashMap, int, int, int, HashMap<DeterminantValueSet.Determinants, ArrayList<Span>>, DeterminantValueSet.DirectionPrefer, char, boolean, char) - Method in class edu.utah.bmi.rush.core.FastCRules

processRules(String, HashMap<DeterminantValueSet.Determinants, ArrayList<Span>>, DeterminantValueSet.DirectionPrefer) - Method in class edu.utah.bmi.rush.core.FastCRules

Because the input parameters are different, this method is overridden.

processRules(char[], HashMap, int, int, int, HashMap<DeterminantValueSet.Determinants, ArrayList<Span>>, DeterminantValueSet.DirectionPrefer, char, boolean, char) - Method in class edu.utah.bmi.rush.core.FastCRules

processString(String, DeterminantValueSet.DirectionPrefer) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

processWildCards(char[], HashMap, int, int, int, HashMap<DeterminantValueSet.Determinants, ArrayList<Span>>, DeterminantValueSet.DirectionPrefer, char) - Method in class edu.utah.bmi.rush.core.FastCRules

\d A digit \C A capital letter \c A lower case letter \s A whitespace \n A return \( Beginning of capturing a group \) End of capturing a group \p A punctuation \+ An addition symbol (to distinguish the "+" after a wildcard) The wildcard plus "+": 1 or more wildcard

punctuation - Static variable in class edu.utah.bmi.nlp.SimpleParser

R

returnc - Static variable in class edu.utah.bmi.nlp.SimpleParser

Rule - Class in edu.utah.bmi.nlp

Rule(int, String, String, DeterminantValueSet.Determinants) - Constructor for class edu.utah.bmi.nlp.Rule

Rule(int, String, String, double, DeterminantValueSet.Determinants) - Constructor for class edu.utah.bmi.nlp.Rule

rule - Variable in class edu.utah.bmi.nlp.Rule

ruleId - Variable in class edu.utah.bmi.nlp.Span

ruleId - Variable in class edu.utah.bmi.rush.core.FastCRules

ruleName - Variable in class edu.utah.bmi.nlp.Rule

rules - Variable in class edu.utah.bmi.rush.core.FastCRules

ruleStore - Variable in class edu.utah.bmi.rush.core.FastCRules

RunUIMAJcasGen - Class in edu.utah.bmi.rush.uima

This class is to call UIMA tool jcasgen to generate Java classes for Type descriptor.

RunUIMAJcasGen() - Constructor for class edu.utah.bmi.rush.uima.RunUIMAJcasGen

RuSH - Class in edu.utah.bmi.rush.core

RuSH(String) - Constructor for class edu.utah.bmi.rush.core.RuSH

RuSH_AE - Class in edu.utah.bmi.rush.uima

This is RuSH Wrapper into UIMA analyses engine.

RuSH_AE() - Constructor for class edu.utah.bmi.rush.uima.RuSH_AE

RuSHTestAE_General - Class in edu.utah.bmi.rush.uima

This is a test AE to check the output of RuSH (or other sentence segmenter) in UIMA pipeline.

RuSHTestAE_General() - Constructor for class edu.utah.bmi.rush.uima.RuSHTestAE_General

S

saveAnnotation(JCas, Constructor<? extends Annotation>, int, int) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

saveSentence(JCas, int, int) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

saveSentences(JCas, Span) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

saveToken(JCas, int, int) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

saveTokens(JCas, Span, ArrayList<Span>) - Method in class edu.utah.bmi.rush.uima.RuSH_AE

score - Variable in class edu.utah.bmi.nlp.Rule

score - Variable in class edu.utah.bmi.nlp.Span

scores - Variable in class edu.utah.bmi.rush.core.FastCRules

scSupport - Variable in class edu.utah.bmi.rush.core.FastCRules

seg - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

segToSentenceSpans(String) - Method in class edu.utah.bmi.rush.core.RuSH

segToSentenceStrings(String) - Method in class edu.utah.bmi.rush.core.RuSH

Sentence - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016 XML source: desc/type/All_Types.xml

Sentence() - Constructor for class edu.utah.bmi.type.system.Sentence

Never called.

Sentence(int, TOP_Type) - Constructor for class edu.utah.bmi.type.system.Sentence

Internal - constructor used by generator

Sentence(JCas) - Constructor for class edu.utah.bmi.type.system.Sentence

Sentence(JCas, int, int) - Constructor for class edu.utah.bmi.type.system.Sentence

Sentence_Type - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016

Sentence_Type(JCas, Type) - Constructor for class edu.utah.bmi.type.system.Sentence_Type

initialize variables to correspond with Cas Type and Features

SentenceOdd - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016 XML source: desc/type/All_Types.xml

SentenceOdd() - Constructor for class edu.utah.bmi.type.system.SentenceOdd

Never called.

SentenceOdd(int, TOP_Type) - Constructor for class edu.utah.bmi.type.system.SentenceOdd

Internal - constructor used by generator

SentenceOdd(JCas) - Constructor for class edu.utah.bmi.type.system.SentenceOdd

SentenceOdd(JCas, int, int) - Constructor for class edu.utah.bmi.type.system.SentenceOdd

SentenceOdd_Type - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016

SentenceOdd_Type(JCas, Type) - Constructor for class edu.utah.bmi.type.system.SentenceOdd_Type

initialize variables to correspond with Cas Type and Features

SentenceType - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

SentenceTypeConstructor - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

sentenceTypeId - Static variable in class edu.utah.bmi.rush.uima.RuSHTestAE_General

setCompareMethod(String) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

setCompareMethod(String) - Method in class edu.utah.bmi.rush.core.FastCRules

setDebug(boolean) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

setDebug(boolean) - Method in class edu.utah.bmi.rush.core.FastCRules

setDebug(boolean) - Method in class edu.utah.bmi.rush.core.RuSH

setReplicationSupport(boolean) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

setReplicationSupport(boolean) - Method in class edu.utah.bmi.rush.core.FastCRules

Using "+" to support replications might slow down the performance of FastCRules, try to avoid using it as much as possible.

setScore(int, double) - Method in class edu.utah.bmi.rush.core.FastCRules

setSpecialCharacterSupport(Boolean) - Method in class edu.utah.bmi.rush.core.FastCRuleProcessor

setSpecialCharacterSupport(Boolean) - Method in class edu.utah.bmi.rush.core.FastCRules

setSpecialCharacterSupport(Boolean) - Method in class edu.utah.bmi.rush.core.RuSH

SimpleParser - Class in edu.utah.bmi.nlp

SimpleParser() - Constructor for class edu.utah.bmi.nlp.SimpleParser

Span - Class in edu.utah.bmi.nlp

This class stores the span information of the evidence support the corresponding Determinants The field width is used to prioritize the wider rulesMap.

Span(int, int) - Constructor for class edu.utah.bmi.nlp.Span

Span(int, int, String) - Constructor for class edu.utah.bmi.nlp.Span

Span(int, int, int) - Constructor for class edu.utah.bmi.nlp.Span

Span(int, int, int, double) - Constructor for class edu.utah.bmi.nlp.Span

supportReplications - Variable in class edu.utah.bmi.rush.core.FastCRules

T

text - Variable in class edu.utah.bmi.nlp.Span

Token - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016 XML source: desc/type/All_Types.xml

Token() - Constructor for class edu.utah.bmi.type.system.Token

Never called.

Token(int, TOP_Type) - Constructor for class edu.utah.bmi.type.system.Token

Internal - constructor used by generator

Token(JCas) - Constructor for class edu.utah.bmi.type.system.Token

Token(JCas, int, int) - Constructor for class edu.utah.bmi.type.system.Token

Token_Type - Class in edu.utah.bmi.type.system

Updated by JCasGen Fri Nov 04 19:43:41 MDT 2016

Token_Type(JCas, Type) - Constructor for class edu.utah.bmi.type.system.Token_Type

initialize variables to correspond with Cas Type and Features

tokenize2Spans(String, boolean) - Static method in class edu.utah.bmi.nlp.SimpleParser

Tokenize to an ArrayList of Spans, regardless of sentences or paragraphs

TokenType - Variable in class edu.utah.bmi.rush.uima.RuSH_AE

TokenTypeConstructor - Static variable in class edu.utah.bmi.rush.uima.RuSH_AE

toString() - Method in class edu.utah.bmi.nlp.Rule

type - Variable in class edu.utah.bmi.nlp.Rule

type - Static variable in class edu.utah.bmi.type.system.Sentence

type - Static variable in class edu.utah.bmi.type.system.SentenceOdd

type - Static variable in class edu.utah.bmi.type.system.Token

typeIndexID - Static variable in class edu.utah.bmi.type.system.Sentence

typeIndexID - Static variable in class edu.utah.bmi.type.system.Sentence_Type

typeIndexID - Static variable in class edu.utah.bmi.type.system.SentenceOdd

typeIndexID - Static variable in class edu.utah.bmi.type.system.SentenceOdd_Type

typeIndexID - Static variable in class edu.utah.bmi.type.system.Token

typeIndexID - Static variable in class edu.utah.bmi.type.system.Token_Type

V

valueOf(String) - Static method in enum edu.utah.bmi.nlp.DeterminantValueSet.Determinants

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.utah.bmi.rush.core.DeterminantValueSet.Determinants

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.utah.bmi.rush.core.DeterminantValueSet.DirectionPrefer

Returns the enum constant of this type with the specified name.

values() - Static method in enum edu.utah.bmi.nlp.DeterminantValueSet.Determinants

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.utah.bmi.rush.core.DeterminantValueSet.Determinants

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.utah.bmi.rush.core.DeterminantValueSet.DirectionPrefer

Returns an array containing the constants of this enum type, in the order they are declared.

W

width - Variable in class edu.utah.bmi.nlp.Span

WildCardChecker - Class in edu.utah.bmi.nlp

WildCardChecker() - Constructor for class edu.utah.bmi.nlp.WildCardChecker

A B C D E F G I L M P R S T V W