- GAC_ENV - Field in GceApiHelper
-
- GceApiHelper - Class in nextflow.cloud.google
Helper class for Google Compute Engine.
- GceApiHelper(String, String) - Constructor in GceApiHelper
-
- getCleanupCmd(String) - Method in GoogleLifeSciencesScriptLauncher
-
- getClient() - Method in GoogleCloudDriver
-
Gets com.google.api.services.compute.Compute instance given the current
configuration parameter
- getConfig() - Method in GoogleLifeSciencesExecutor
-
- getCredentialsFile() - Method in GceApiHelper
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- getEnvironment() - Method in GoogleLifeSciencesHelper
-
- getEnvironment() - Method in GooglePipelinesHelper
-
- getEnvScript(Map, boolean) - Method in GoogleLifeSciencesFileCopyStrategy
-
{@inheritDoc}
- getEnvScript(Map, boolean) - Method in GooglePipelinesFileCopyStrategy
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{@inheritDoc}
- getHelper() - Method in GoogleLifeSciencesExecutor
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- getInstanceList(String) - Method in GceApiHelper
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- getLocalInstanceId() - Method in GoogleCloudDriver
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- getLocalTaskDir(Path) - Method in GoogleLifeSciencesHelper
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- getLocalTerminationNotice() - Method in GoogleCloudDriver
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- getMachineType0(String, int, MemoryUnit) - Method in GoogleLifeSciencesTaskHandler
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- getMachineType() - Method in GoogleLifeSciencesTaskHandler
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- getMainScript(Path) - Method in GoogleLifeSciencesHelper
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- getProcessMachineType(String, String, int, MemoryUnit) - Method in GooglePipelinesTaskHandler
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- getProjectIdFromCreds(String) - Method in GoogleLifeSciencesConfig
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- getRemoteTaskDir(Path) - Method in GoogleLifeSciencesHelper
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- getScratchDirectoryCommand() - Method in GoogleLifeSciencesScriptLauncher
-
- getScratchDirectoryCommand() - Method in GooglePipelinesScriptLauncher
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- getStageCommand() - Method in GoogleLifeSciencesScriptLauncher
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- getStageInputFilesScript(Map<String, Path>) - Method in GoogleLifeSciencesFileCopyStrategy
-
- getStageInputFilesScript(Map<String, Path>) - Method in GooglePipelinesFileCopyStrategy
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- getStagingScript(Path) - Method in GoogleLifeSciencesHelper
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- getTraceRecord() - Method in GoogleLifeSciencesTaskHandler
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- getTraceRecord() - Method in GooglePipelinesTaskHandler
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- getUnstageCommand() - Method in GoogleLifeSciencesScriptLauncher
-
- getUnstageControls() - Method in GoogleLifeSciencesScriptLauncher
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- getUnstageOutputFilesScript(List<String>, Path) - Method in GoogleLifeSciencesFileCopyStrategy
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- getUnstageOutputFilesScript(List<String>, Path) - Method in GooglePipelinesFileCopyStrategy
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- getUnstagingScript(Path) - Method in GoogleLifeSciencesHelper
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- getWorkDir() - Method in GoogleLifeSciencesExecutor
-
- getWorkDir() - Method in GooglePipelinesExecutor
-
- GoogleCloudDriver - Class in nextflow.cloud.google
Cloud driver implementation for Google Compute Engine.
- GoogleCloudDriver(Map) - Constructor in GoogleCloudDriver
-
Initialise the Google cloud driver with the specified parameters
- GoogleLifeSciencesConfig - Class in nextflow.cloud.google.lifesciences
Helper class wrapping configuration required for Google Pipelines.
- GoogleLifeSciencesConfig() - Constructor in GoogleLifeSciencesConfig
-
- GoogleLifeSciencesExecutor - Class in nextflow.cloud.google.lifesciences
Google Pipelines Executor.
- GoogleLifeSciencesFileCopyStrategy - Class in nextflow.cloud.google.lifesciences
Defines the file/script copy strategies for Google Pipelines.
- GoogleLifeSciencesFileCopyStrategy(TaskBean, GoogleLifeSciencesTaskHandler) - Constructor in GoogleLifeSciencesFileCopyStrategy
-
- GoogleLifeSciencesHelper - Class in nextflow.cloud.google.lifesciences
Helper class for Google Pipelines.
- GoogleLifeSciencesHelper.ActionFlags - Enum in nextflow.cloud.google.lifesciences
As defined by Google pipeline API
https://cloud.google.com/genomics/reference/rest/Shared.Types/Flag
- GoogleLifeSciencesHelper(GoogleLifeSciencesConfig) - Constructor in GoogleLifeSciencesHelper
-
- GoogleLifeSciencesScriptLauncher - Class in nextflow.cloud.google.lifesciences
Implements BASH launcher script for Google Pipelines.
- GoogleLifeSciencesScriptLauncher(TaskBean, GoogleLifeSciencesTaskHandler) - Constructor in GoogleLifeSciencesScriptLauncher
-
- GoogleLifeSciencesSubmitRequest - Class in nextflow.cloud.google.lifesciences
Models Google pipeline request for a Nextflow task executor
- GoogleLifeSciencesTaskHandler - Class in nextflow.cloud.google.lifesciences
Task handler for Google Pipelines.
- GoogleLifeSciencesTaskHandler() - Constructor in GoogleLifeSciencesTaskHandler
-
- GooglePipelinesConfiguration - Class in nextflow.cloud.google.pipelines
Helper class wrapping configuration required for Google Pipelines.
- GooglePipelinesConfiguration(String, List<String>, List<String>, Path, boolean) - Constructor in GooglePipelinesConfiguration
-
- GooglePipelinesExecutor - Class in nextflow.cloud.google.pipelines
Google Pipelines Executor.
- GooglePipelinesExecutor() - Constructor in GooglePipelinesExecutor
-
- GooglePipelinesFileCopyStrategy - Class in nextflow.cloud.google.pipelines
Defines the file/script copy strategies for Google Pipelines.
- GooglePipelinesFileCopyStrategy(TaskBean, GooglePipelinesTaskHandler) - Constructor in GooglePipelinesFileCopyStrategy
-
- GooglePipelinesHelper - Class in nextflow.cloud.google.pipelines
Helper class for Google Pipelines.
- GooglePipelinesHelper.ActionFlags - Enum in nextflow.cloud.google.pipelines
As defined by Google pipeline API
https://cloud.google.com/genomics/reference/rest/Shared.Types/Flag
- GooglePipelinesHelper(GoogleCredential, String) - Constructor in GooglePipelinesHelper
-
- GooglePipelinesScriptLauncher - Class in nextflow.cloud.google.pipelines
Implements BASH launcher script for Google Pipelines.
- GooglePipelinesScriptLauncher(TaskBean, GooglePipelinesTaskHandler) - Constructor in GooglePipelinesScriptLauncher
-
- GooglePipelinesSubmitRequest - Class in nextflow.cloud.google.pipelines
Models Google pipeline request for a Nextflow task executor
- GooglePipelinesTaskHandler - Class in nextflow.cloud.google.pipelines
Task handler for Google Pipelines.
- GooglePipelinesTaskHandler() - Constructor in GooglePipelinesTaskHandler
-
- GsPathFactory - Class in nextflow.cloud.google.util
Implements FileSystemPathFactory interface for Google storage
- GsPathSerializer - Class in nextflow.cloud.google.util
Serializer for a com.google.cloud.storage.contrib.nio.CloudStoragePath