GoogleLifeSciencesConfig (nf-google 20.04.1 API)

Summary:
Field
Property
Constructor
Method

nextflow.cloud.google.lifesciences.GoogleLifeSciencesConfig

Helper class wrapping configuration required for Google Pipelines.
Authors:
Ólafur Haukur Flygenring

Field Summary

Fields
Modifiers	Name	Description
`static java.lang.String`	`DEFAULT_COPY_IMAGE`
`static java.lang.String`	`DEFAULT_ENTRY_POINT`
`static java.lang.String`	`DEFAULT_SSH_IMAGE`

Properties Summary

Properties
Type	Name and description
`nextflow.util.MemoryUnit`	`bootDiskSize`
`java.lang.String`	`copyImage`
`java.lang.Integer`	`debugMode`
`boolean`	`disableBinDir`
`java.lang.String`	`location`
`boolean`	`preemptible`
`java.lang.String`	`project`
`java.util.List<java.lang.String>`	`regions`
`java.nio.file.Path`	`remoteBinDir`
`boolean`	`sshDaemon`
`java.lang.String`	`sshImage`
`boolean`	`usePrivateAddress`
`java.util.List<java.lang.String>`	`zones`

Constructor Summary

Constructors
Constructor and description
`GoogleLifeSciencesConfig (java.lang.String project, java.util.List<java.lang.String> zone, java.util.List<java.lang.String> region, java.nio.file.Path remoteBinDir = null, boolean preemptible = false)`
`GoogleLifeSciencesConfig ()`

Methods Summary

Methods
Type Params	Return Type	Name and description
	`static java.lang.String`	`bestLocationForRegion(java.lang.String region)`
	`static java.lang.String`	`fallbackToRegionOrZone(java.util.List<java.lang.String> regions, java.util.List<java.lang.String> zones)`
	`static GoogleLifeSciencesConfig`	`fromSession(nextflow.Session session)`
	`protected static GoogleLifeSciencesConfig`	`fromSession0(java.util.Map config)`
	`static java.lang.String`	`getProjectIdFromCreds(java.lang.String credsFilePath)`

Inherited Methods Summary

Inherited Methods
Methods inherited from class	Name
`class java.lang.Object`	`java.lang.Object#wait(long, int), java.lang.Object#wait(long), java.lang.Object#wait(), java.lang.Object#equals(java.lang.Object), java.lang.Object#toString(), java.lang.Object#hashCode(), java.lang.Object#getClass(), java.lang.Object#notify(), java.lang.Object#notifyAll()`

- Field Detail
  - public static final java.lang.String DEFAULT_COPY_IMAGE
  - public static final java.lang.String DEFAULT_ENTRY_POINT
  - public static final java.lang.String DEFAULT_SSH_IMAGE
- Property Detail
  - nextflow.util.MemoryUnit bootDiskSize
  - java.lang.String copyImage
  - java.lang.Integer debugMode
  - boolean disableBinDir
  - java.lang.String location
  - boolean preemptible
  - java.lang.String project
  - java.util.List<java.lang.String> regions
  - java.nio.file.Path remoteBinDir
  - boolean sshDaemon
  - java.lang.String sshImage
  - boolean usePrivateAddress
  - java.util.List<java.lang.String> zones
- Constructor Detail
  - @java.lang.Deprecated GoogleLifeSciencesConfig(java.lang.String project, java.util.List<java.lang.String> zone, java.util.List<java.lang.String> region, java.nio.file.Path remoteBinDir = null, boolean preemptible = false)
  - GoogleLifeSciencesConfig()
- Method Detail
  - static java.lang.String bestLocationForRegion(java.lang.String region)
  - static java.lang.String fallbackToRegionOrZone(java.util.List<java.lang.String> regions, java.util.List<java.lang.String> zones)
  - static GoogleLifeSciencesConfig fromSession(nextflow.Session session)
  - protected static GoogleLifeSciencesConfig fromSession0(java.util.Map config)
  - static java.lang.String getProjectIdFromCreds(java.lang.String credsFilePath)

Summary:
Field
Property
Constructor
Method

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