Field Summary

Fields 

Modifiers	Name	Description
static java.lang.String	DEFAULT_DISK_NAME

Inherited fields 

Fields inherited from class	Fields
class nextflow.processor.TaskHandler	__$stMC

Properties Summary

Properties 

Type	Name and description
GoogleLifeSciencesExecutor	executor

Constructor Summary

Constructors 

Constructor and description
GoogleLifeSciencesTaskHandler (nextflow.processor.TaskRun task, GoogleLifeSciencesExecutor executor)
protected GoogleLifeSciencesTaskHandler ()

Methods Summary

Methods 

Type Params	Return Type	Name and description
	boolean	checkIfCompleted()
	boolean	checkIfRunning() @return It should return true only the very first time the the task status transitions from SUBMITTED to RUNNING, in all other cases if should return false
	protected com.google.api.services.lifesciences.v2beta.model.Mount	configureMount(java.lang.String diskName, java.lang.String mountPath, boolean readOnly = false)
	protected java.lang.String	getMachineType()
	protected java.lang.String	getMachineType0(java.lang.String taskMachineType, int cpus, nextflow.util.MemoryUnit memory)
	nextflow.trace.TraceRecord	getTraceRecord()
	void	kill()
	protected void	logEvents(com.google.api.services.compute.model.Operation operation)
	static java.lang.String	prettyPrint(com.google.api.services.compute.model.Operation op)
	static java.lang.String	prettyPrint(java.util.List<com.google.api.services.lifesciences.v2beta.model.Event> events)
	void	submit()
	void	validateConfiguration()

Inherited Methods Summary

Inherited Methods 

Methods inherited from class

Name

class nextflow.processor.TaskHandler

nextflow.processor.TaskHandler#setProperty(java.lang.String, java.lang.Object), nextflow.processor.TaskHandler#getProperty(java.lang.String), nextflow.processor.TaskHandler#toString(), nextflow.processor.TaskHandler#getStatus(), nextflow.processor.TaskHandler#setStatus(nextflow.processor.TaskStatus), nextflow.processor.TaskHandler#kill(), nextflow.processor.TaskHandler#invokeMethod(java.lang.String, java.lang.Object), nextflow.processor.TaskHandler#getMetaClass(), nextflow.processor.TaskHandler#setMetaClass(groovy.lang.MetaClass), nextflow.processor.TaskHandler#checkIfRunning(), nextflow.processor.TaskHandler#checkIfCompleted(), nextflow.processor.TaskHandler#isSubmitted(), nextflow.processor.TaskHandler#isCompleted(), nextflow.processor.TaskHandler#submit(), nextflow.processor.TaskHandler#isRunning(), nextflow.processor.TaskHandler#getTask(), nextflow.processor.TaskHandler#isNew(), nextflow.processor.TaskHandler#setTask(nextflow.processor.TaskRun), nextflow.processor.TaskHandler#getStatusString(), nextflow.processor.TaskHandler#getTraceRecord(), nextflow.processor.TaskHandler#canForkProcess(), nextflow.processor.TaskHandler#incProcessForks(), nextflow.processor.TaskHandler#decProcessForks(), nextflow.processor.TaskHandler#getSubmitTimeMillis(), nextflow.processor.TaskHandler#setSubmitTimeMillis(long), nextflow.processor.TaskHandler#getStartTimeMillis(), nextflow.processor.TaskHandler#setStartTimeMillis(long), nextflow.processor.TaskHandler#getCompleteTimeMillis(), nextflow.processor.TaskHandler#setCompleteTimeMillis(long), nextflow.processor.TaskHandler#super$1$toString(), nextflow.processor.TaskHandler#wait(long, int), nextflow.processor.TaskHandler#wait(long), nextflow.processor.TaskHandler#wait(), nextflow.processor.TaskHandler#equals(java.lang.Object), nextflow.processor.TaskHandler#hashCode(), nextflow.processor.TaskHandler#getClass(), nextflow.processor.TaskHandler#notify(), nextflow.processor.TaskHandler#notifyAll()