Inherited fields 

Fields inherited from class	Fields
class nextflow.executor.BashWrapperBuilder	BASH, systemOsName, __$stMC

Constructor Summary

Constructors 

Constructor and description
GooglePipelinesScriptLauncher (nextflow.processor.TaskBean bean, GooglePipelinesTaskHandler handler)

Methods Summary

Methods 

Type Params	Return Type	Name and description
	java.lang.String	copyFile(java.lang.String name, java.nio.file.Path target)
	protected java.lang.String	getScratchDirectoryCommand()

Inherited Methods Summary

Inherited Methods 

Methods inherited from class

Name

class nextflow.executor.BashWrapperBuilder

nextflow.executor.BashWrapperBuilder#setProperty(java.lang.String, java.lang.Object), nextflow.executor.BashWrapperBuilder#getProperty(java.lang.String), nextflow.executor.BashWrapperBuilder#clone(), nextflow.executor.BashWrapperBuilder#clone(), nextflow.executor.BashWrapperBuilder#getName(), nextflow.executor.BashWrapperBuilder#setName(java.lang.String), nextflow.executor.BashWrapperBuilder#getScript(), nextflow.executor.BashWrapperBuilder#copyFile(java.lang.String, java.nio.file.Path), nextflow.executor.BashWrapperBuilder#setScript(java.lang.String), nextflow.executor.BashWrapperBuilder#getInputFiles(), nextflow.executor.BashWrapperBuilder#getInput(), nextflow.executor.BashWrapperBuilder#build(), nextflow.executor.BashWrapperBuilder#getEnvironment(), nextflow.executor.BashWrapperBuilder#setEnvironment(java.util.Map), nextflow.executor.BashWrapperBuilder#invokeMethod(java.lang.String, java.lang.Object), nextflow.executor.BashWrapperBuilder#getMetaClass(), nextflow.executor.BashWrapperBuilder#setMetaClass(groovy.lang.MetaClass), nextflow.executor.BashWrapperBuilder#getOutputFiles(), nextflow.executor.BashWrapperBuilder#setInput(java.lang.Object), nextflow.executor.BashWrapperBuilder#getWorkDir(), nextflow.executor.BashWrapperBuilder#getTargetDir(), nextflow.executor.BashWrapperBuilder#getScratch(), nextflow.executor.BashWrapperBuilder#getOutputEnvNames(), nextflow.executor.BashWrapperBuilder#getCondaEnv(), nextflow.executor.BashWrapperBuilder#getContainerConfig(), nextflow.executor.BashWrapperBuilder#isContainerNative(), nextflow.executor.BashWrapperBuilder#isContainerEnabled(), nextflow.executor.BashWrapperBuilder#setWorkDir(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#getStageInMode(), nextflow.executor.BashWrapperBuilder#getStageOutMode(), nextflow.executor.BashWrapperBuilder#getStageInputFilesScript(java.util.Map), nextflow.executor.BashWrapperBuilder#getUnstageOutputFilesScript(java.util.List, java.nio.file.Path), nextflow.executor.BashWrapperBuilder#getBeforeStartScript(), nextflow.executor.BashWrapperBuilder#touchFile(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#fileStr(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#exitFile(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#pipeInputFile(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#getEnvScript(java.util.Map, boolean), nextflow.executor.BashWrapperBuilder#setTargetDir(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#getContainerEnabled(), nextflow.executor.BashWrapperBuilder#getContainerNative(), nextflow.executor.BashWrapperBuilder#getShell(), nextflow.executor.BashWrapperBuilder#getHeaderScript(), nextflow.executor.BashWrapperBuilder#getCleanupCmd(java.lang.String), nextflow.executor.BashWrapperBuilder#getAfterScript(), nextflow.executor.BashWrapperBuilder#getStatsEnabled(), nextflow.executor.BashWrapperBuilder#getModuleNames(), nextflow.executor.BashWrapperBuilder#getBeforeScript(), nextflow.executor.BashWrapperBuilder#moduleLoad(java.lang.String), nextflow.executor.BashWrapperBuilder#getCleanup(), nextflow.executor.BashWrapperBuilder#getExitScriptLegacy(java.lang.String), nextflow.executor.BashWrapperBuilder#getContainerImage(), nextflow.executor.BashWrapperBuilder#getBinDir(), nextflow.executor.BashWrapperBuilder#getContainerMount(), nextflow.executor.BashWrapperBuilder#getContainerMemory(), nextflow.executor.BashWrapperBuilder#getContainerCpuset(), nextflow.executor.BashWrapperBuilder#getContainerOptions(), nextflow.executor.BashWrapperBuilder#setScratch(java.lang.Object), nextflow.executor.BashWrapperBuilder#setHeaderScript(java.lang.String), nextflow.executor.BashWrapperBuilder#setContainerImage(java.lang.String), nextflow.executor.BashWrapperBuilder#setCondaEnv(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#setModuleNames(java.util.List), nextflow.executor.BashWrapperBuilder#setShell(java.util.List), nextflow.executor.BashWrapperBuilder#setContainerConfig(nextflow.container.ContainerConfig), nextflow.executor.BashWrapperBuilder#setContainerCpuset(java.lang.String), nextflow.executor.BashWrapperBuilder#setContainerMemory(nextflow.util.MemoryUnit), nextflow.executor.BashWrapperBuilder#setContainerMount(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#isStatsEnabled(), nextflow.executor.BashWrapperBuilder#setStatsEnabled(boolean), nextflow.executor.BashWrapperBuilder#setOutputEnvNames(java.util.List), nextflow.executor.BashWrapperBuilder#setBeforeScript(java.lang.String), nextflow.executor.BashWrapperBuilder#setAfterScript(java.lang.String), nextflow.executor.BashWrapperBuilder#getContainerExecutable(), nextflow.executor.BashWrapperBuilder#isContainerExecutable(), nextflow.executor.BashWrapperBuilder#setContainerExecutable(boolean), nextflow.executor.BashWrapperBuilder#setContainerNative(boolean), nextflow.executor.BashWrapperBuilder#setContainerEnabled(boolean), nextflow.executor.BashWrapperBuilder#setContainerOptions(java.lang.String), nextflow.executor.BashWrapperBuilder#setInputFiles(java.util.Map), nextflow.executor.BashWrapperBuilder#setOutputFiles(java.util.List), nextflow.executor.BashWrapperBuilder#setStageInMode(java.lang.String), nextflow.executor.BashWrapperBuilder#setStageOutMode(java.lang.String), nextflow.executor.BashWrapperBuilder#getSharedDir(), nextflow.executor.BashWrapperBuilder#setSharedDir(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#setBinDir(java.nio.file.Path), nextflow.executor.BashWrapperBuilder#setCleanup(java.lang.Object), nextflow.executor.BashWrapperBuilder#getCopyStrategy(), nextflow.executor.BashWrapperBuilder#setCopyStrategy(nextflow.executor.ScriptFileCopyStrategy), nextflow.executor.BashWrapperBuilder#wait(long, int), nextflow.executor.BashWrapperBuilder#wait(long), nextflow.executor.BashWrapperBuilder#wait(), nextflow.executor.BashWrapperBuilder#equals(java.lang.Object), nextflow.executor.BashWrapperBuilder#toString(), nextflow.executor.BashWrapperBuilder#hashCode(), nextflow.executor.BashWrapperBuilder#getClass(), nextflow.executor.BashWrapperBuilder#notify(), nextflow.executor.BashWrapperBuilder#notifyAll()