Package ome.xml.model

Class Experimenter

    • Constructor Detail

      • Experimenter

        public Experimenter()
        Default constructor.

      • Experimenter

        public Experimenter​(org.w3c.dom.Element element,
                    OMEModel model)
             throws EnumerationException
        Constructs Experimenter recursively from an XML DOM tree.
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.

      • Experimenter

        public Experimenter​(Experimenter orig)
        Copy constructor.

    • Method Detail

      • update

        public void update​(org.w3c.dom.Element element,
                   OMEModel model)
            throws EnumerationException
        Updates Experimenter recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.
        Specified by:
        update in interface OMEModelObject
        Overrides:
        update in class AbstractOMEModelObject
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.

      • link

        public boolean link​(Reference reference,
                    OMEModelObject o)
        Description copied from interface: OMEModelObject
        Link a given OME model object to this model object.
        Specified by:
        link in interface OMEModelObject
        Overrides:
        link in class AbstractOMEModelObject
        Parameters:
        reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.
        o - Model object to link to.
        Returns:
        true if this model object was able to handle the reference, false otherwise.

      • getID

        public java.lang.String getID()

      • setID

        public void setID​(java.lang.String id)

      • getFirstName

        public java.lang.String getFirstName()

      • setFirstName

        public void setFirstName​(java.lang.String firstName)

      • getMiddleName

        public java.lang.String getMiddleName()

      • setMiddleName

        public void setMiddleName​(java.lang.String middleName)

      • getLastName

        public java.lang.String getLastName()

      • setLastName

        public void setLastName​(java.lang.String lastName)

      • getEmail

        public java.lang.String getEmail()

      • setEmail

        public void setEmail​(java.lang.String email)

      • getInstitution

        public java.lang.String getInstitution()

      • setInstitution

        public void setInstitution​(java.lang.String institution)

      • getUserName

        public java.lang.String getUserName()

      • setUserName

        public void setUserName​(java.lang.String userName)

      • sizeOfLinkedAnnotationList

        public int sizeOfLinkedAnnotationList()

      • copyLinkedAnnotationList

        public java.util.List<Annotation> copyLinkedAnnotationList()

      • getLinkedAnnotation

        public Annotation getLinkedAnnotation​(int index)

      • linkAnnotation

        public boolean linkAnnotation​(Annotation o)

      • unlinkAnnotation

        public boolean unlinkAnnotation​(Annotation o)

      • sizeOfLinkedImageList

        public int sizeOfLinkedImageList()

      • copyLinkedImageList

        public java.util.List<Image> copyLinkedImageList()

      • getLinkedImage

        public Image getLinkedImage​(int index)

      • setLinkedImage

        public Image setLinkedImage​(int index,
                            Image o)

      • linkImage

        public boolean linkImage​(Image o)

      • unlinkImage

        public boolean unlinkImage​(Image o)

      • sizeOfLinkedMicrobeamManipulationList

        public int sizeOfLinkedMicrobeamManipulationList()

      • copyLinkedMicrobeamManipulationList

        public java.util.List<MicrobeamManipulation> copyLinkedMicrobeamManipulationList()

      • getLinkedMicrobeamManipulation

        public MicrobeamManipulation getLinkedMicrobeamManipulation​(int index)

      • sizeOfLinkedProjectList

        public int sizeOfLinkedProjectList()

      • copyLinkedProjectList

        public java.util.List<Project> copyLinkedProjectList()

      • getLinkedProject

        public Project getLinkedProject​(int index)

      • setLinkedProject

        public Project setLinkedProject​(int index,
                                Project o)

      • linkProject

        public boolean linkProject​(Project o)

      • unlinkProject

        public boolean unlinkProject​(Project o)

      • sizeOfLinkedExperimenterGroupList

        public int sizeOfLinkedExperimenterGroupList()

      • copyLinkedExperimenterGroupList

        public java.util.List<ExperimenterGroup> copyLinkedExperimenterGroupList()

      • getLinkedExperimenterGroup

        public ExperimenterGroup getLinkedExperimenterGroup​(int index)

      • linkExperimenterGroup

        public boolean linkExperimenterGroup​(ExperimenterGroup o)

      • unlinkExperimenterGroup

        public boolean unlinkExperimenterGroup​(ExperimenterGroup o)

      • sizeOfLinkedDatasetList

        public int sizeOfLinkedDatasetList()

      • copyLinkedDatasetList

        public java.util.List<Dataset> copyLinkedDatasetList()

      • getLinkedDataset

        public Dataset getLinkedDataset​(int index)

      • setLinkedDataset

        public Dataset setLinkedDataset​(int index,
                                Dataset o)

      • linkDataset

        public boolean linkDataset​(Dataset o)

      • unlinkDataset

        public boolean unlinkDataset​(Dataset o)

      • sizeOfLinkedExperimentList

        public int sizeOfLinkedExperimentList()

      • copyLinkedExperimentList

        public java.util.List<Experiment> copyLinkedExperimentList()

      • getLinkedExperiment

        public Experiment getLinkedExperiment​(int index)

      • linkExperiment

        public boolean linkExperiment​(Experiment o)

      • unlinkExperiment

        public boolean unlinkExperiment​(Experiment o)

      • asXMLElement

        public org.w3c.dom.Element asXMLElement​(org.w3c.dom.Document document)
        Description copied from interface: OMEModelObject
        Takes the entire object hierarchy and produces an XML DOM tree.
        Specified by:
        asXMLElement in interface OMEModelObject
        Specified by:
        asXMLElement in class AbstractOMEModelObject
        Parameters:
        document - Destination document for element creation, etc.
        Returns:
        XML DOM tree root element for this model object.

      • asXMLElement

        public org.w3c.dom.Element asXMLElement​(org.w3c.dom.Document document,
                                        org.w3c.dom.Element Experimenter_element)
        Description copied from class: AbstractOMEModelObject
        Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
        Overrides:
        asXMLElement in class AbstractOMEModelObject
        Parameters:
        document - Destination document for element creation, etc.
        Experimenter_element - Element from the subclass. If null a new element will be created of this class.
        Returns:
        element populated with properties from this class.