Package ome.xml.model

Class NumericAnnotation

java.lang.Object

ome.xml.model.AbstractOMEModelObject

ome.xml.model.Annotation

ome.xml.model.BasicAnnotation

ome.xml.model.NumericAnnotation

All Implemented Interfaces:

OMEModelObject

Direct Known Subclasses:

DoubleAnnotation, LongAnnotation

public abstract class NumericAnnotation
extends BasicAnnotation

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	NAMESPACE

Constructor Summary

Constructors

Constructor	Description
NumericAnnotation()	Default constructor.
NumericAnnotation(NumericAnnotation orig)	Copy constructor.
NumericAnnotation(org.w3c.dom.Element element, OMEModel model)	Constructs NumericAnnotation recursively from an XML DOM tree.

Method Summary

Modifier and Type	Method	Description
org.w3c.dom.Element	asXMLElement(org.w3c.dom.Document document)	Takes the entire object hierarchy and produces an XML DOM tree.
org.w3c.dom.Element	asXMLElement(org.w3c.dom.Document document, org.w3c.dom.Element NumericAnnotation_element)	Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
boolean	link(Reference reference, OMEModelObject o)	Link a given OME model object to this model object.
void	update(org.w3c.dom.Element element, OMEModel model)	Updates NumericAnnotation recursively from an XML DOM tree.

Methods inherited from class ome.xml.model.Annotation

copyLinkedAnnotationList, copyLinkedChannelList, copyLinkedDatasetList, copyLinkedDetectorList, copyLinkedDichroicList, copyLinkedExperimenterGroupList, copyLinkedExperimenterList, copyLinkedFilterList, copyLinkedFolderList, copyLinkedImageList, copyLinkedInstrumentList, copyLinkedLightPathList, copyLinkedLightSourceList, copyLinkedObjectiveList, copyLinkedPlaneList, copyLinkedPlateAcquisitionList, copyLinkedPlateList, copyLinkedProjectList, copyLinkedReagentList, copyLinkedROIList, copyLinkedScreenList, copyLinkedShapeList, copyLinkedWellList, getAnnotator, getDescription, getID, getLinkedAnnotation, getLinkedChannel, getLinkedDataset, getLinkedDetector, getLinkedDichroic, getLinkedExperimenter, getLinkedExperimenterGroup, getLinkedFilter, getLinkedFolder, getLinkedImage, getLinkedInstrument, getLinkedLightPath, getLinkedLightSource, getLinkedObjective, getLinkedPlane, getLinkedPlate, getLinkedPlateAcquisition, getLinkedProject, getLinkedReagent, getLinkedROI, getLinkedScreen, getLinkedShape, getLinkedWell, getNamespace, linkAnnotation, linkChannel, linkDataset, linkDetector, linkDichroic, linkExperimenter, linkExperimenterGroup, linkFilter, linkFolder, linkImage, linkInstrument, linkLightPath, linkLightSource, linkObjective, linkPlane, linkPlate, linkPlateAcquisition, linkProject, linkReagent, linkROI, linkScreen, linkShape, linkWell, setAnnotator, setDescription, setID, setLinkedAnnotation, setLinkedChannel, setLinkedDataset, setLinkedDetector, setLinkedDichroic, setLinkedExperimenter, setLinkedExperimenterGroup, setLinkedFilter, setLinkedFolder, setLinkedImage, setLinkedInstrument, setLinkedLightPath, setLinkedLightSource, setLinkedObjective, setLinkedPlane, setLinkedPlate, setLinkedPlateAcquisition, setLinkedProject, setLinkedReagent, setLinkedROI, setLinkedScreen, setLinkedShape, setLinkedWell, setNamespace, sizeOfLinkedAnnotationList, sizeOfLinkedChannelList, sizeOfLinkedDatasetList, sizeOfLinkedDetectorList, sizeOfLinkedDichroicList, sizeOfLinkedExperimenterGroupList, sizeOfLinkedExperimenterList, sizeOfLinkedFilterList, sizeOfLinkedFolderList, sizeOfLinkedImageList, sizeOfLinkedInstrumentList, sizeOfLinkedLightPathList, sizeOfLinkedLightSourceList, sizeOfLinkedObjectiveList, sizeOfLinkedPlaneList, sizeOfLinkedPlateAcquisitionList, sizeOfLinkedPlateList, sizeOfLinkedProjectList, sizeOfLinkedReagentList, sizeOfLinkedROIList, sizeOfLinkedScreenList, sizeOfLinkedShapeList, sizeOfLinkedWellList, unlinkAnnotation, unlinkChannel, unlinkDataset, unlinkDetector, unlinkDichroic, unlinkExperimenter, unlinkExperimenterGroup, unlinkFilter, unlinkFolder, unlinkImage, unlinkInstrument, unlinkLightPath, unlinkLightSource, unlinkObjective, unlinkPlane, unlinkPlate, unlinkPlateAcquisition, unlinkProject, unlinkReagent, unlinkROI, unlinkScreen, unlinkShape, unlinkWell

Methods inherited from class ome.xml.model.AbstractOMEModelObject

getChildrenByTagName, stripNamespacePrefix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAMESPACE

public static final java.lang.String NAMESPACE

See Also:

Constant Field Values

Constructor Detail

NumericAnnotation

public NumericAnnotation()

Default constructor.

NumericAnnotation

public NumericAnnotation(org.w3c.dom.Element element,
                         OMEModel model)
                  throws EnumerationException

Constructs NumericAnnotation recursively from an XML DOM tree.

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

NumericAnnotation

public NumericAnnotation(NumericAnnotation orig)

Copy constructor.

Method Detail

update

public void update(org.w3c.dom.Element element,
                   OMEModel model)
            throws EnumerationException

Updates NumericAnnotation recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.

Specified by:

update in interface OMEModelObject

Overrides:

update in class BasicAnnotation

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

link

public boolean link(Reference reference,
                    OMEModelObject o)

Description copied from interface: OMEModelObject

Link a given OME model object to this model object.

Specified by:

link in interface OMEModelObject

Overrides:

link in class BasicAnnotation

Parameters:

reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.

o - Model object to link to.

Returns:

true if this model object was able to handle the reference, false otherwise.

asXMLElement

public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document)

Description copied from interface: OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

Specified by:

asXMLElement in interface OMEModelObject

Overrides:

asXMLElement in class BasicAnnotation

Parameters:

document - Destination document for element creation, etc.

Returns:

XML DOM tree root element for this model object.

asXMLElement

public org.w3c.dom.Element asXMLElement(org.w3c.dom.Document document,
                                        org.w3c.dom.Element NumericAnnotation_element)

Description copied from class: AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

Overrides:

asXMLElement in class BasicAnnotation

Parameters:

document - Destination document for element creation, etc.

NumericAnnotation_element - Element from the subclass. If null a new element will be created of this class.

Returns:

element populated with properties from this class.