net.maizegenetics.analysis.data

Class AdjustPhasingPlugin

AbstractPlugin

net.maizegenetics.analysis.data.AdjustPhasingPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class AdjustPhasingPlugin
extends AbstractPlugin

Constructor Detail

AdjustPhasingPlugin

public AdjustPhasingPlugin(java.awt.Frame parentFrame,
                           boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

inputVCFFile

public java.lang.String inputVCFFile()

Input VCF file

Returns:

org.jetbrains.dokka.NodeRenderContent@5efa4a98: Input VCF File

inputVCFFile

public AdjustPhasingPlugin inputVCFFile(java.lang.String value)

Set Input VCF File. Input file

Parameters:

value - Input VCF File

Returns:

org.jetbrains.dokka.NodeRenderContent@6708fa3f: this plugin

hapcutDir

public java.lang.String hapcutDir()

Directory containing Hapcut output files.

Returns:

org.jetbrains.dokka.NodeRenderContent@789044b4: Hapcut Dir

hapcutDir

public AdjustPhasingPlugin hapcutDir(java.lang.String value)

Set Hapcut Dir. Directory containing Hapcut output files.

Parameters:

value - Hapcut Dir

Returns:

org.jetbrains.dokka.NodeRenderContent@4d1304a1: this plugin

outputVCFFile

public java.lang.String outputVCFFile()

Output VCF file

Returns:

org.jetbrains.dokka.NodeRenderContent@41b13911: Output VCF File

outputVCFFile

public AdjustPhasingPlugin outputVCFFile(java.lang.String value)

Set Output VCF File. Output VCF file

Parameters:

value - Output VCF File

Returns:

org.jetbrains.dokka.NodeRenderContent@6148fa1a: this plugin

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()