Hierarchy For Package net.maizegenetics.analysis.data

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
  • net.maizegenetics.analysis.data.AddReferenceAlleleToHDF5Plugin
  • net.maizegenetics.analysis.data.AddReferenceToGenotypePlugin
  • net.maizegenetics.analysis.data.AdjustPhasingPlugin
  • net.maizegenetics.analysis.data.BuildUnfinishedHDF5GenotypesPlugin
  • net.maizegenetics.analysis.data.CombineDataSetsPlugin
  • net.maizegenetics.analysis.data.ConvertAlignmentCoordinatesPlugin
  • net.maizegenetics.analysis.data.CreateHybridGenotypesPlugin
  • net.maizegenetics.analysis.data.ExportMultiplePlugin
  • net.maizegenetics.analysis.data.ExportPlugin
  • net.maizegenetics.analysis.data.ExtractHapmapSubsetPlugin
  • net.maizegenetics.analysis.data.FeatureListToPositionsPlugin
  • net.maizegenetics.analysis.data.FileLoadPlugin
  • net.maizegenetics.analysis.data.FindInversionsPlugin
  • net.maizegenetics.analysis.data.GenomeAnnosDBQueryToPositionListPlugin
  • net.maizegenetics.analysis.data.GenosToABHPlugin
  • net.maizegenetics.analysis.data.GenotypeSummaryPlugin
  • net.maizegenetics.analysis.data.GenotypeToAdditiveValuesPlugin
  • net.maizegenetics.analysis.data.GetPositionListPlugin
  • net.maizegenetics.analysis.data.GetTaxaListPlugin
  • net.maizegenetics.analysis.data.HDF5SummaryPlugin
  • net.maizegenetics.analysis.data.HetsToUnknownPlugin
  • net.maizegenetics.analysis.data.IdentityRecognitionPlugin
  • net.maizegenetics.analysis.data.IndelsToUnknownPlugin
  • net.maizegenetics.analysis.data.KmerCountingPlugin
  • net.maizegenetics.analysis.data.LIXPlugin
  • net.maizegenetics.analysis.data.MaskGenotypePlugin
  • net.maizegenetics.analysis.data.MemoryUsagePlugin
  • net.maizegenetics.analysis.data.MergeAlignmentsSameSitesPlugin
  • net.maizegenetics.analysis.data.MergeGenotypeTablesPlugin
  • net.maizegenetics.analysis.data.MergeGenotypeTablesPluginV2
  • net.maizegenetics.analysis.data.MergeHDF5GenotypesSameSitesPlugin
  • net.maizegenetics.analysis.data.MergeRenameDeleteTaxaPlugin
  • net.maizegenetics.analysis.data.PassThroughPlugin
  • net.maizegenetics.analysis.data.PlinkLoadPlugin
  • net.maizegenetics.analysis.data.PrincipalComponentsPlugin
  • net.maizegenetics.analysis.data.ProjectPcsAndRunModelSelectionPlugin
  • net.maizegenetics.analysis.data.ProjectionLoadPlugin
  • net.maizegenetics.analysis.data.SeparatePlugin
  • net.maizegenetics.analysis.data.SetLowDepthGenosToMissingPlugin
  • net.maizegenetics.analysis.data.SortGenotypeFilePlugin
  • net.maizegenetics.analysis.data.SortTaxaAlphabeticallyPlugin
  • net.maizegenetics.analysis.data.SplitHDF5ByChromosomePlugin
  • net.maizegenetics.analysis.data.SubtractGenotypesPlugin
  • net.maizegenetics.analysis.data.SynonymizerPlugin
  • net.maizegenetics.analysis.data.ThinSitesByPositionPlugin
  • net.maizegenetics.analysis.data.UnionAlignmentPlugin
    • net.maizegenetics.analysis.data.IntersectionAlignmentPlugin
• net.maizegenetics.analysis.data.LowLevelCopyOfHDF5
• net.maizegenetics.analysis.data.KmerCountingPluginKt
• net.maizegenetics.analysis.data.MigrateHDF5FromT4T5

Enum Hierarchy

• net.maizegenetics.analysis.data.MergeGenotypeTablesPluginV2.CALL_MERGE
• net.maizegenetics.analysis.data.MergeGenotypeTablesPluginV2.MERGE_TYPES
• net.maizegenetics.analysis.data.PrincipalComponentsPlugin.PCA_LIMIT
• net.maizegenetics.analysis.data.SortGenotypeFilePlugin.SupportedFileTypes
• net.maizegenetics.analysis.data.MergeGenotypeTablesPluginV2.DEPTH_MERGE
• net.maizegenetics.analysis.data.FindInversionsPlugin.WINDOW_UNIT
• net.maizegenetics.analysis.data.GenosToABHPlugin.OUTPUT_CHECK
• net.maizegenetics.analysis.data.FileLoadPlugin.TasselFileType