net.maizegenetics.analysis.gbs

Class TagBlockPosition

net.maizegenetics.analysis.gbs.TagBlockPosition

public class TagBlockPosition

Stores physical position of tags. The physical position of tag is used to block the corresponding marker in genetic mapping if the tag is mapping to the marker coming from itself Positions come from TOPM alignment hypothesis or the best position from machine learning prediction

Constructor Detail

TagBlockPosition

public TagBlockPosition(java.lang.String tbtH5FileS,
                        java.lang.String topmFileS,
                        int TOPMVersionValue)

TagBlockPosition

public TagBlockPosition(java.lang.String tbtH5FileS,
                        java.lang.String topmH5FileS,
                        java.lang.String software)

TagBlockPosition

public TagBlockPosition(java.lang.String blockFileS)

Method Detail

readTagBlockPostition

public void readTagBlockPostition(java.lang.String blockFileS)

writeTagBlockPosition

public void writeTagBlockPosition(java.lang.String blockFileS,
                                  kotlin.Array[] selectIndex)

writeTagBlockPosition

public void writeTagBlockPosition(java.lang.String blockFileS)

getBlockChr

public kotlin.Array[] getBlockChr()

getBlockPos

public kotlin.Array[] getBlockPos()

getBlockChr

public int getBlockChr(int index)

getBlockPos

public int getBlockPos(int index)