net.maizegenetics.analysis.gbs.pana

Class PanAUsageExample

net.maizegenetics.analysis.gbs.pana.PanAUsageExample

public class PanAUsageExample

Constructor Detail

PanAUsageExample

public PanAUsageExample()

Method Detail

readDigestPlugin

public void readDigestPlugin()

mergeMultipleTagCountPlugin

public void mergeMultipleTagCountPlugin()

buildPivotTBTPlugin

public void buildPivotTBTPlugin()

h5ToAnchorPlugin

public void h5ToAnchorPlugin()

splitTBTPlugin

public void splitTBTPlugin()

buildTagBlockPositionPlugin

public void buildTagBlockPositionPlugin()

splitTagBlockPositionPlugin

public void splitTagBlockPositionPlugin()

GWASMappingPlugin

public void GWASMappingPlugin()

mergeMappingResultPlugin

public void mergeMappingResultPlugin()

mappingResultToTagGWASMapPlugin

public void mappingResultToTagGWASMapPlugin()

tagMapToFastaPlugin

public void tagMapToFastaPlugin()

alignmentWithBowtie2

public void alignmentWithBowtie2()

samToMultiPositionTOPMPlugin

public void samToMultiPositionTOPMPlugin()

addPosToTagMapPlugin

public void addPosToTagMapPlugin()

buildTrainingSetPlugin

public void buildTrainingSetPlugin()

modelTrainingPlugin

public void modelTrainingPlugin()

predictionPlugin

public void predictionPlugin()

filterTagMapPlugin

public void filterTagMapPlugin()

main

public static void main(java.lang.String[] args)