net.maizegenetics.analysis.gobii

Class GOBIIPostgresConnection

net.maizegenetics.analysis.gobii.GOBIIPostgresConnection

public class GOBIIPostgresConnection

Method Detail

connection

public static java.sql.Connection connection(java.lang.String propertiesFile)

Creates a Postgres database connection given a properties file

Parameters:

propertiesFile - properties file

Returns:

org.jetbrains.dokka.NodeRenderContent@4dcc838c: Postgres database connection

connection

public static java.sql.Connection connection(java.lang.String host,
                                             java.lang.String user,
                                             java.lang.String password,
                                             java.lang.String dbName)

Creates a Postgres database connection.

Parameters:

host - hostname

user - user id

password - password

dbName - database name

Returns:

org.jetbrains.dokka.NodeRenderContent@34bc3c43: Postgres database connection

taxaList

public static TaxaList taxaList(java.sql.Connection postgres,
                                java.lang.String datasetName,
                                java.sql.Connection bms)

positionList

public static PositionList positionList(java.sql.Connection connection,
                                        java.lang.String datasetName)

hdf5Filename

public static java.lang.String hdf5Filename(java.sql.Connection connection,
                                            java.lang.String datasetName)

printAvailableDatasets

public static void printAvailableDatasets(java.sql.Connection connection)