net.maizegenetics.analysis.imputation

Classes

• AGPMap
• BackwardForwardAlgorithm
• BackwardForwardVariableStateNumber
• BiparentalHaplotypeFinder
• CallParentAllelesPlugin
• ClusterGenotypesPlugin
• CrossProgenyEmissionMatrix
• EmissionProbability
• FILLINDonorGenotypeUtils
• FILLINFindHaplotypesPlugin
• FILLINImputationAccuracy
• FILLINImputationPlugin
• FILLINImputationUtils
• FSFHapImputationPlugin
• FindMergeHaplotypesPlugin
• ImputationAccuracyPlugin
• ImputationUtils
• ImputeCrossProgeny
• ImputeProgenyStatesPlugin
• LDKNNiImputationHetV2Plugin
• LDKNNiImputationHetV3Plugin
• LDKNNiImputationPlugin
• MergeBreakpointFilesPlugin
• NucleotideImputationUtils
• ParentPhasingPlugin
• PhaseHighCoverage
• PopulationData
• RandomGenotypeImputationPlugin
• ReImputeUpdatedTaxaByFILLINPlugin
• RemoveIndelsForBeaglePlugin
• RephaseParents
• SelfedHaplotypeFinder
• SubpopulationFinder
• TransitionProbability
• TransitionProbabilityWithVariableRecombination
• UseParentHaplotypes
• ViterbiAlgorithm
• ViterbiAlgorithmPlugin
• ViterbiAlgorithmVariableStateNumber
• WritePopulationAlignmentPlugin