Hierarchy For Package net.maizegenetics.analysis.imputation

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
  • net.maizegenetics.analysis.imputation.CallParentAllelesPlugin
  • net.maizegenetics.analysis.imputation.ClusterGenotypesPlugin
  • net.maizegenetics.analysis.imputation.FILLINFindHaplotypesPlugin
  • net.maizegenetics.analysis.imputation.FILLINImputationPlugin
  • net.maizegenetics.analysis.imputation.FSFHapImputationPlugin
  • net.maizegenetics.analysis.imputation.FindMergeHaplotypesPlugin
  • net.maizegenetics.analysis.imputation.ImputationAccuracyPlugin
  • net.maizegenetics.analysis.imputation.ImputeProgenyStatesPlugin
  • net.maizegenetics.analysis.imputation.LDKNNiImputationHetV2Plugin
  • net.maizegenetics.analysis.imputation.LDKNNiImputationHetV3Plugin
  • net.maizegenetics.analysis.imputation.LDKNNiImputationPlugin
  • net.maizegenetics.analysis.imputation.MergeBreakpointFilesPlugin
  • net.maizegenetics.analysis.imputation.ParentPhasingPlugin
  • net.maizegenetics.analysis.imputation.RandomGenotypeImputationPlugin
  • net.maizegenetics.analysis.imputation.ReImputeUpdatedTaxaByFILLINPlugin
  • net.maizegenetics.analysis.imputation.RemoveIndelsForBeaglePlugin
  • net.maizegenetics.analysis.imputation.ViterbiAlgorithmPlugin
  • net.maizegenetics.analysis.imputation.WritePopulationAlignmentPlugin
• net.maizegenetics.analysis.imputation.EmissionProbability
  • net.maizegenetics.analysis.imputation.CrossProgenyEmissionMatrix
• net.maizegenetics.analysis.imputation.ImputationUtils
• net.maizegenetics.analysis.imputation.FILLINDonorGenotypeUtils
• net.maizegenetics.analysis.imputation.SelfedHaplotypeFinder
• net.maizegenetics.analysis.imputation.ViterbiAlgorithmVariableStateNumber
• net.maizegenetics.analysis.imputation.UseParentHaplotypes
• net.maizegenetics.analysis.imputation.BackwardForwardAlgorithm
• net.maizegenetics.analysis.imputation.SubpopulationFinder
• net.maizegenetics.analysis.imputation.NucleotideImputationUtils
• net.maizegenetics.analysis.imputation.BackwardForwardVariableStateNumber
• net.maizegenetics.analysis.imputation.FILLINImputationUtils
• net.maizegenetics.analysis.imputation.BiparentalHaplotypeFinder
• net.maizegenetics.analysis.imputation.FILLINImputationAccuracy
• net.maizegenetics.analysis.imputation.RephaseParents
• net.maizegenetics.analysis.imputation.PhaseHighCoverage
• net.maizegenetics.analysis.imputation.AGPMap
• net.maizegenetics.analysis.imputation.ImputeCrossProgeny
• net.maizegenetics.analysis.imputation.ViterbiAlgorithm
• net.maizegenetics.analysis.imputation.PopulationData
• net.maizegenetics.analysis.imputation.TransitionProbability
  • net.maizegenetics.analysis.imputation.TransitionProbabilityWithVariableRecombination