| Class | Description |
|---|---|
| FindMatchByWordHash |
Find Match by Words using a simple hashmap of fixed length word (kmers) to determine most similar sequence.
|
| LoadRNAContigsToGBSDBPlugin |
Develops a discovery TBT file from a set of GBS sequence files. Keeps only good reads having a barcode and a cut site and no N's in the useful part of the sequence. Trims off the barcodes and truncates sequences that (1) have a second cut site, or (2) read into the common adapter. Originally the reference throughout was to "tag". This is being changed to "kmer" as the pipeline is a kmer alignment process.
|
| RNADeMultiPlexSeqToDBPlugin | |
| RNADeMultiplexProductionPlugin |