net.maizegenetics.dna

Enum WHICH_ALLELE

public enum WHICH_ALLELE

This defines the possible alleles.

Enum Constant Detail

Major

WHICH_ALLELE Major

Major Allele - Most frequent allele.

Minor

WHICH_ALLELE Minor

Minor Allele - Second most frequent allele.

GlobalMajor

WHICH_ALLELE GlobalMajor

Global Major Allele

GlobalMinor

WHICH_ALLELE GlobalMinor

Global Minor Allele

Reference

WHICH_ALLELE Reference

Reference Allele

Alternate

WHICH_ALLELE Alternate

Alternate to Reference Allele

HighCoverage

WHICH_ALLELE HighCoverage

High Coverage Allele

LowCoverage

WHICH_ALLELE LowCoverage

Low Coverage Allele

Minor2

WHICH_ALLELE Minor2

Remaining Minor Alleles

Minor3

WHICH_ALLELE Minor3

Minor4

WHICH_ALLELE Minor4

Minor5

WHICH_ALLELE Minor5

Ancestral

WHICH_ALLELE Ancestral

Ancestral Allele

Unknown

WHICH_ALLELE Unknown

Diploid Unknown

Field Detail

COUNT

public static int COUNT

Count of the number of allele types

Method Detail

index

public int index()

Sequential index that can be use for primitive arrays

frequencyAlleles

public static WHICH_ALLELE[] frequencyAlleles()