net.maizegenetics.dna.snp

Class TranslateIndexBuilder

net.maizegenetics.dna.snp.TranslateIndexBuilder

public class TranslateIndexBuilder

Method Detail

getInstance

public static TranslateIndexBuilder getInstance(int numBaseIndices)

getInstance

public static TranslateIndexBuilder getInstance(TranslateIndex base)

getInstance

public static TranslateIndexBuilder getInstance(int numBaseIndices,
                                                TranslateIndex base)

merge

public static TranslateIndex merge(TranslateIndex base,
                                   TranslateIndex translate)

noTranslation

public static TranslateIndex noTranslation(int numIndices)

Returns no translation instance.

Parameters:

numIndices - number of indices

Returns:

org.jetbrains.dokka.NodeRenderContent@5f3fed9a: no translation instance

orderedTranslation

public static TranslateIndex orderedTranslation(kotlin.Array[] indexRedirect,
                                                TranslateIndex base,
                                                int numBaseIndices)

unorderedTranslation

public static TranslateIndex unorderedTranslation(kotlin.Array[] indicesNewOrder,
                                                  TranslateIndex base)

range

public static TranslateIndex range(int start,
                                   int end,
                                   TranslateIndex base,
                                   int numBaseIndices)

Keeps a range of indices from start (inclusive) to end (inclusive)

Parameters:

start - start index

end - end index

base - base translation

numBaseIndices - number of indices in base

Returns:

org.jetbrains.dokka.NodeRenderContent@1e87472d: new translation

unordered

public TranslateIndexBuilder unordered()

keepIndex

public TranslateIndexBuilder keepIndex(int index)

Keep specified index.

Parameters:

index - index

Returns:

org.jetbrains.dokka.NodeRenderContent@3e399851: this builder

keepIndices

public TranslateIndexBuilder keepIndices(int start,
                                         int end)

Keeps a range of indices from start (inclusive) to end (inclusive)

Parameters:

start - lower index

end - last index to keep

Returns:

org.jetbrains.dokka.NodeRenderContent@4953be46: this builder

keepIndices

public TranslateIndexBuilder keepIndices(kotlin.Array[] indices)

numIndices

public int numIndices()

build

public TranslateIndex build()