net.maizegenetics.dna.snp.genotypecall

Class MaskGenotypeCallTable

net.maizegenetics.dna.snp.genotypecall.MaskGenotypeCallTable

public class MaskGenotypeCallTable

Constructor Detail

MaskGenotypeCallTable

public MaskGenotypeCallTable(GenotypeCallTable base,
                             MaskMatrix mask)

Method Detail

genotype

public byte genotype(int taxon,
                     int site)

genotypeForAllTaxa

public kotlin.Array[] genotypeForAllTaxa(int site)

genotypeForAllSites

public kotlin.Array[] genotypeForAllSites(int taxon)

genotypeAsString

public java.lang.String genotypeAsString(int taxon,
                                         int site)

genotypeAsStringRange

public java.lang.String genotypeAsStringRange(int taxon,
                                              int startSite,
                                              int endSite)

diploidAsString

public java.lang.String diploidAsString(int site,
                                        byte value)

transposeData

public void transposeData(boolean siteInnerLoop)

isSiteOptimized

public boolean isSiteOptimized()