Hierarchy For Package net.maizegenetics.dna.snp

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.dna.snp.FilterTableReport (implements net.maizegenetics.util.TableReport)
• net.maizegenetics.dna.snp.ImportUtils
• net.maizegenetics.dna.snp.CombineGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
• net.maizegenetics.dna.snp.Translate
  • net.maizegenetics.dna.snp.TranslateNegative
• net.maizegenetics.dna.snp.TranslateIndex
  • net.maizegenetics.dna.snp.TranslateIndexRange
  • net.maizegenetics.dna.snp.TranslateIndexRedirect
    • net.maizegenetics.dna.snp.TranslateIndexRedirectUnordered
• net.maizegenetics.dna.snp.ExportUtils
• net.maizegenetics.dna.snp.FilterGenotypeTable
• net.maizegenetics.dna.snp.MaskSiteMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
• net.maizegenetics.dna.snp.AbstractMaskMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
  • net.maizegenetics.dna.snp.MaskGenotypeMatrix
  • net.maizegenetics.dna.snp.MaskGenotypeStatsMatrix
• net.maizegenetics.dna.snp.FilterSite (implements net.maizegenetics.dna.snp.Filter)
• net.maizegenetics.dna.snp.FilterList
• net.maizegenetics.dna.snp.GenotypeTableBuilder
• net.maizegenetics.dna.snp.FilterTaxa (implements net.maizegenetics.dna.snp.Filter)
• net.maizegenetics.dna.snp.TranslateIndexBuilder
• net.maizegenetics.dna.snp.GenotypeTableUtils
• net.maizegenetics.dna.snp.FilterAndMaskGVCFGenomeSequence
• net.maizegenetics.dna.snp.TOPMGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
• net.maizegenetics.dna.snp.ProjectionBuilder
• net.maizegenetics.dna.snp.TranslateBuilder
• net.maizegenetics.dna.snp.MaskTaxaMatrix (implements net.maizegenetics.dna.snp.MaskMatrix)
• net.maizegenetics.dna.snp.ReadSequenceAlignmentUtils
• net.maizegenetics.dna.snp.MaskMatrixBuilder
• net.maizegenetics.dna.snp.CoreGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)
• net.maizegenetics.dna.snp.HapMapHDF5Constants
• net.maizegenetics.dna.snp.SimpleAllele (implements net.maizegenetics.dna.snp.Allele)
• net.maizegenetics.dna.snp.NucleotideAlignmentConstants
• net.maizegenetics.dna.snp.MergedGenotypeTable (implements net.maizegenetics.dna.snp.GenotypeTable)

Interface Hierarchy

• net.maizegenetics.dna.snp.Allele
• net.maizegenetics.dna.snp.Filter
• net.maizegenetics.dna.snp.GenotypeTable
• net.maizegenetics.dna.snp.MaskMatrix

Enum Hierarchy

• net.maizegenetics.dna.snp.GenotypeTable.ALLELE_SORT_TYPE
• net.maizegenetics.dna.snp.GenotypeTable.GENOTYPE_TABLE_COMPONENT
• net.maizegenetics.dna.snp.FilterTaxa.FILTER_TAXA_ATTRIBUTES
• net.maizegenetics.dna.snp.FilterSite.SITE_RANGE_FILTER_TYPES
• net.maizegenetics.dna.snp.FilterSite.FILTER_SITES_ATTRIBUTES