net.maizegenetics.dna.snp.score

Class AlleleProbability

net.maizegenetics.dna.snp.score.AlleleProbability

All Implemented Interfaces:

SiteScore

Direct Known Subclasses:

FilterAlleleProbability, MaskAlleleProbability

public class AlleleProbability
implements SiteScore

Field Detail

ALLELE_PROBABILITY_TYPES

public static net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE[] ALLELE_PROBABILITY_TYPES

Constructor Detail

AlleleProbability

public AlleleProbability(int numTaxa,
                         int numSites)

Method Detail

value

public float value(int taxon,
                   int site,
                   net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE scoreType)

siteScoreTypes

public java.util.Set<net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE> siteScoreTypes()

numTaxa

public int numTaxa()

numSites

public int numSites()