net.maizegenetics.dna.snp.score

Class AlleleProbabilityBuilder

net.maizegenetics.dna.snp.score.AlleleProbabilityBuilder

public class AlleleProbabilityBuilder

Method Detail

getInstance

public static AlleleProbabilityBuilder getInstance(ch.systemsx.cisd.hdf5.IHDF5Writer writer,
                                                   int numTaxa,
                                                   int numSites,
                                                   TaxaList taxaList)

getAlleleProbabilityInstance

public static AlleleProbabilityBuilder getAlleleProbabilityInstance(int numTaxa,
                                                                    int numSites,
                                                                    TaxaList taxaList)

getFilteredInstance

public static AlleleProbability getFilteredInstance(AlleleProbability base,
                                                    Translate translate)

getMaskInstance

public static AlleleProbability getMaskInstance(AlleleProbability base,
                                                MaskMatrix mask)

getInstance

public static AlleleProbability getInstance(ch.systemsx.cisd.hdf5.IHDF5Reader reader)

addTaxon

public AlleleProbabilityBuilder addTaxon(int taxon,
                                         kotlin.Array[] values,
                                         net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE type)

addTaxon

public AlleleProbabilityBuilder addTaxon(int taxon,
                                         kotlin.Array[] values,
                                         net.maizegenetics.dna.snp.score.SiteScore.SITE_SCORE_TYPE type)

build

public AlleleProbability build()