net.maizegenetics.dna.snp.score

Class ReferenceProbabilityBuilder

net.maizegenetics.dna.snp.score.ReferenceProbabilityBuilder

public class ReferenceProbabilityBuilder

Method Detail

getInstance

public static ReferenceProbabilityBuilder getInstance(ch.systemsx.cisd.hdf5.IHDF5Writer writer,
                                                      int numTaxa,
                                                      int numSites,
                                                      TaxaList taxaList)

getInstance

public static ReferenceProbabilityBuilder getInstance(int numTaxa,
                                                      int numSites,
                                                      TaxaList taxaList)

getFilteredInstance

public static ReferenceProbability getFilteredInstance(ReferenceProbability base,
                                                       Translate translate)

getMaskInstance

public static ReferenceProbability getMaskInstance(ReferenceProbability base,
                                                   MaskMatrix mask)

getInstance

public static ReferenceProbability getInstance(ch.systemsx.cisd.hdf5.IHDF5Reader reader)

addTaxon

public ReferenceProbabilityBuilder addTaxon(int taxon,
                                            kotlin.Array[] values)

build

public ReferenceProbability build()