net.maizegenetics.phenotype

Interface PhenotypeAttribute

All Known Implementing Classes:

CategoricalAttribute, NumericAttribute, TaxaAttribute

public PhenotypeAttribute

Method Detail

value

java.lang.Object value(int obs)

Parameters:

obs - the observation number

Returns:

org.jetbrains.dokka.NodeRenderContent@7aeaf877: the value for this observation

allValues

java.lang.Object allValues()

The return value will typically be a primitive array whose type depends on the sub class

Returns:

org.jetbrains.dokka.NodeRenderContent@22230e86: the values of this Attribute for all observations, in order by observation number

subset

PhenotypeAttribute subset(kotlin.Array[] obs,
                          java.lang.String newName)

Parameters:

obs - an array of observation numbers

newName - The name for the new PhenotypeAttribute

Returns:

org.jetbrains.dokka.NodeRenderContent@1eb14a5f: a new PhenotypeAttribute equivalent to this one but with a subset of observations specified by obs

changeName

PhenotypeAttribute changeName(java.lang.String newName)

Parameters:

newName - a new name for this PhenotypeAttribute

Returns:

org.jetbrains.dokka.NodeRenderContent@47be0585: a copy of this PhenotypeAttribute with newName as its name

isMissing

boolean isMissing(int obs)

Parameters:

obs - the observation number

Returns:

org.jetbrains.dokka.NodeRenderContent@6a3a6445: if the value of the observation is missing, true, otherwise false.

missing

BitSet missing()

Returns:

org.jetbrains.dokka.NodeRenderContent@50d710ba: an array whose elements are true for each missing observation, false for observations with valid values.

name

java.lang.String name()

Returns:

org.jetbrains.dokka.NodeRenderContent@44204b4d: the name of this Attribute

size

int size()

Returns:

org.jetbrains.dokka.NodeRenderContent@7305fc61: the number of observations in this Attribute

getCompatibleTypes

java.util.List<net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE> getCompatibleTypes()

Returns:

org.jetbrains.dokka.NodeRenderContent@4a24b608: a list of attribute types that are compatible with this attribute For instance, a CategoricalAttribute can only have a type of factor while a NumericPhenotype can have a type of data or covariate.

isTypeCompatible

boolean isTypeCompatible(net.maizegenetics.phenotype.Phenotype.ATTRIBUTE_TYPE type)

Parameters:

type - an attribute type

Returns:

org.jetbrains.dokka.NodeRenderContent@229e3d36: true if type is compatible with this attribute