net.maizegenetics.stats.linearmodels

Class SweepFast

net.maizegenetics.stats.linearmodels.SweepFast

public class SweepFast

Field Detail

TOL

public static double TOL

See Also:

Constant Field Values

Constructor Detail

SweepFast

public SweepFast(DoubleMatrix X,
                 DoubleMatrix y)

SweepFast

public SweepFast(DoubleMatrix XTX,
                 DoubleMatrix XTy,
                 double yty)

SweepFast

public SweepFast(DoubleMatrix[] xtxMatrices,
                 DoubleMatrix[] xtyMatrices,
                 double yty)

SweepFast

public SweepFast()

Method Detail

revg2sweep

public boolean revg2sweep(int column)

sweepSingularColumns

public int sweepSingularColumns()

setcssDmin

public void setcssDmin(kotlin.Array[] css)

setDminFromA

public void setDminFromA()

getResidualSS

public double getResidualSS()

getBeta

public kotlin.Array[] getBeta()

getXTXpart

public DoubleMatrix getXTXpart()

getA

public DoubleMatrix getA()

getSubsetOfA

public DoubleMatrix getSubsetOfA(kotlin.Array[] exclude)

getUTA

public kotlin.Array[] getUTA()

setUTA

public void setUTA(kotlin.Array[] A)

fullSweepSetDmin

public void fullSweepSetDmin()

XTXSweepSetDmin

public void XTXSweepSetDmin()

copy

public SweepFast copy()

getDimensionOfA

public int getDimensionOfA()

isSingular

public boolean isSingular(int column)

UTAFromDoubleMatrix

public static kotlin.Array[] UTAFromDoubleMatrix(DoubleMatrix A)