net.maizegenetics.taxa.tree

Class SplitUtils

net.maizegenetics.taxa.tree.SplitUtils

public class SplitUtils

utilities for split systems

Method Detail

getSplits

public static SplitSystem getSplits(TaxaList idGroup,
                                    Tree tree)

creates a split system from a tree (using a pre-specified order of sequences)

Parameters:

idGroup - sequence order for the matrix

tree -

getSplits

public static SplitSystem getSplits(Tree tree)

creates a split system from a tree (using tree-induced order of sequences)

Parameters:

tree -

getSplit

public static void getSplit(TaxaList idGroup,
                            Node internalNode,
                            kotlin.Array[] split)

get split for branch associated with internal node

Parameters:

idGroup - order of labels

internalNode - Node

split -

isSame

public static boolean isSame(kotlin.Array[] s1,
                             kotlin.Array[] s2)

checks whether two splits are identical (assuming they are of the same length and use the same leaf order)

Parameters:

s1 - split 1

s2 - split 2