net.maizegenetics.analysis.association

Class ReferenceProbabilityFELM

AbstractFixedEffectLM

net.maizegenetics.analysis.association.ReferenceProbabilityFELM

All Implemented Interfaces:

FixedEffectLM

public class ReferenceProbabilityFELM
extends AbstractFixedEffectLM

Constructor Detail

ReferenceProbabilityFELM

public ReferenceProbabilityFELM(Datum data,
                                FixedEffectLMPlugin parentPlugin)

Method Detail

analyzeSite

protected void analyzeSite()

getGenotypeAndUpdateMissing

protected void getGenotypeAndUpdateMissing(BitSet missingObsBeforeSite)

getGenotypeAfterUpdatingMissing

protected void getGenotypeAfterUpdatingMissing()

siteReportColumnNames

protected java.lang.String[] siteReportColumnNames()

alleleReportColumnNames

protected java.lang.String[] alleleReportColumnNames()