Hierarchy For Package net.maizegenetics.analysis.association

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.analysis.association.CompressedMLMusingDoubleMatrix
• net.maizegenetics.analysis.association.AbstractFixedEffectLM (implements net.maizegenetics.analysis.association.FixedEffectLM)
  • net.maizegenetics.analysis.association.AlleleProbabilityFELM
  • net.maizegenetics.analysis.association.DiscreteSitesFELM
  • net.maizegenetics.analysis.association.ReferenceProbabilityFELM
• net.maizegenetics.analysis.association.RegRidgeEmmaDoubleMatrix
• net.maizegenetics.analysis.association.AssociationConstants
• net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
  • net.maizegenetics.analysis.association.EqtlAssociationPlugin
  • net.maizegenetics.analysis.association.FastMultithreadedAssociationPlugin
  • net.maizegenetics.analysis.association.FixedEffectLMPlugin
  • net.maizegenetics.analysis.association.GenomicSelectionPlugin
  • net.maizegenetics.analysis.association.MLMPlugin
    • net.maizegenetics.analysis.association.WeightedMLMPlugin
  • net.maizegenetics.analysis.association.RidgeRegressionEmmaPlugin
• net.maizegenetics.analysis.association.CompressedDoubleMatrix
• net.maizegenetics.analysis.association.PhenotypeLM
• net.maizegenetics.analysis.association.AssociationUtils

Interface Hierarchy

• net.maizegenetics.analysis.association.FixedEffectLM

Enum Hierarchy

• net.maizegenetics.analysis.association.MLMPlugin.CompressionType
• net.maizegenetics.analysis.association.WeightedMLMPlugin.CompressionType
• net.maizegenetics.analysis.association.CompressedDoubleMatrix.kinshipMethod