net.maizegenetics.analysis.avro

Class AvroConstants

net.maizegenetics.analysis.avro.AvroConstants

public class AvroConstants

Field Detail

GENOTYPE_BLOCK_SIZE

public static int GENOTYPE_BLOCK_SIZE

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Constant Field Values

BYTE_SCHEMA

public static org.apache.avro.Schema BYTE_SCHEMA

BYTE_BLOCK_SCHEMA

public static org.apache.avro.Schema BYTE_BLOCK_SCHEMA

ANNOTATION_SCHEMA

public static org.apache.avro.Schema ANNOTATION_SCHEMA

TAXON_SCHEMA

public static org.apache.avro.Schema TAXON_SCHEMA

TAXA_SCHEMA

public static org.apache.avro.Schema TAXA_SCHEMA

CHROMOSOME_SCHEMA

public static org.apache.avro.Schema CHROMOSOME_SCHEMA

POSITION_SCHEMA

public static org.apache.avro.Schema POSITION_SCHEMA

POSITIONS_SCHEMA

public static org.apache.avro.Schema POSITIONS_SCHEMA

POSITION_STRAND

public static java.lang.String POSITION_STRAND

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Constant Field Values

POSITION_CM

public static java.lang.String POSITION_CM

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Constant Field Values

POSITION_IS_NUCLEOTIDE

public static java.lang.String POSITION_IS_NUCLEOTIDE

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Constant Field Values

POSITION_IS_INDEL

public static java.lang.String POSITION_IS_INDEL

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Constant Field Values

POSITION_MAF

public static java.lang.String POSITION_MAF

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Constant Field Values

POSITION_SITE_COVERAGE

public static java.lang.String POSITION_SITE_COVERAGE

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Constant Field Values

POSITION_ALLELE_VALUE

public static java.lang.String POSITION_ALLELE_VALUE

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Constant Field Values

Method Detail

getCacheKey

public static long getCacheKey(int taxon,
                               int site)

getKey

public static java.lang.String getKey(int taxon,
                                      int site)

getTaxonSiteFromKey

public static kotlin.Array[] getTaxonSiteFromKey(java.lang.String keyStr)