net.maizegenetics.analysis.data

Class ExportPlugin

AbstractPlugin

net.maizegenetics.analysis.data.ExportPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class ExportPlugin
extends AbstractPlugin

Constructor Detail

ExportPlugin

public ExportPlugin(java.awt.Frame parentFrame,
                    boolean isInteractive)

Creates a new instance of ExportPlugin

Method Detail

preProcessParameters

protected void preProcessParameters(DataSet input)

processData

public DataSet processData(DataSet input)

performFunctionForDistanceMatrix

public java.lang.String performFunctionForDistanceMatrix(DistanceMatrix input)

performFunctionForTableReport

public java.lang.String performFunctionForTableReport(TableReport input)

performFunctionForFilter

public java.lang.String performFunctionForFilter(FilterList filter)

performFunctionForPhenotype

public java.lang.String performFunctionForPhenotype(Phenotype input)

performFunctionForAlignment

public java.lang.String performFunctionForAlignment(GenotypeTable inputAlignment)

performFunctionForSimpleTree

public java.lang.String performFunctionForSimpleTree(SimpleTree input)

performFunctionForTaxaList

public java.lang.String performFunctionForTaxaList(TaxaList input)

performFunctionForPositionList

public java.lang.String performFunctionForPositionList(PositionList input)

getIcon

public javax.swing.ImageIcon getIcon()

Icon for this plugin to be used in buttons, etc.

Returns:

org.jetbrains.dokka.NodeRenderContent@27d8b898: ImageIcon

getButtonName

public java.lang.String getButtonName()

Button name for this plugin to be used in buttons, etc.

Returns:

org.jetbrains.dokka.NodeRenderContent@19680ced: String

getToolTipText

public java.lang.String getToolTipText()

Tool Tip Text for this plugin

Returns:

org.jetbrains.dokka.NodeRenderContent@3347358c: String

pluginUserManualURL

public java.lang.String pluginUserManualURL()

saveFile

public java.lang.String saveFile()

Save file as...

Returns:

org.jetbrains.dokka.NodeRenderContent@17dc7a01: Save As

saveFile

public ExportPlugin saveFile(java.lang.String value)

Save file as...

Parameters:

value - filename

Returns:

org.jetbrains.dokka.NodeRenderContent@75221c1a: this plugin

setSaveFile

public ExportPlugin setSaveFile(java.lang.String saveFile)

Deprecated.

fileType

public net.maizegenetics.analysis.data.FileLoadPlugin.TasselFileType fileType()

Export file format

Returns:

org.jetbrains.dokka.NodeRenderContent@2c746937: Format

fileType

public ExportPlugin fileType(net.maizegenetics.analysis.data.FileLoadPlugin.TasselFileType value)

Set Format. Export file format

Parameters:

value - Format

Returns:

org.jetbrains.dokka.NodeRenderContent@2695c260: this plugin

setAlignmentFileType

public ExportPlugin setAlignmentFileType(net.maizegenetics.analysis.data.FileLoadPlugin.TasselFileType type)

Deprecated.

keepDepth

public java.lang.Boolean keepDepth()

Whether to keep depth if format supports depth.

Returns:

org.jetbrains.dokka.NodeRenderContent@526da8c1: Keep Depth

keepDepth

public ExportPlugin keepDepth(java.lang.Boolean value)

Set Keep Depth. Whether to keep depth if format supports depth.

Parameters:

value - Keep Depth

Returns:

org.jetbrains.dokka.NodeRenderContent@374aac5a: this plugin

includeTaxaAnnotations

public java.lang.Boolean includeTaxaAnnotations()

Whether to include taxa annotations if format supports taxa annotations.

Returns:

org.jetbrains.dokka.NodeRenderContent@38785655: Include Taxa Annotations

includeTaxaAnnotations

public ExportPlugin includeTaxaAnnotations(java.lang.Boolean value)

Set Include Taxa Annotations. Whether to include taxa annotations if format supports taxa annotations.

Parameters:

value - Include Taxa Annotations

Returns:

org.jetbrains.dokka.NodeRenderContent@30f605f8: this plugin

includeBranchLengths

public java.lang.Boolean includeBranchLengths()

Whether to include branch lengths for Newick formatted files.

Returns:

org.jetbrains.dokka.NodeRenderContent@fe29887: Include Branch Lengths

includeBranchLengths

public ExportPlugin includeBranchLengths(java.lang.Boolean value)

Set Include Branch Lengths. Whether to include branch lengths for Newick formatted files.

Parameters:

value - Include Branch Lengths

Returns:

org.jetbrains.dokka.NodeRenderContent@6d28dd5d: this plugin