net.maizegenetics.analysis.data

Class HDF5SummaryPlugin

AbstractPlugin

net.maizegenetics.analysis.data.HDF5SummaryPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class HDF5SummaryPlugin
extends AbstractPlugin

Created by jgw87 on 5/28/14. This plugin is meant to take an HDF5 file and output a report of various summary statistics or information. INclude

Constructor Detail

HDF5SummaryPlugin

public HDF5SummaryPlugin(java.awt.Frame parentFrame,
                         boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

pluginDescription

public java.lang.String pluginDescription()

inputFile

public HDF5SummaryPlugin inputFile(java.lang.String filename)

outputFile

public HDF5SummaryPlugin outputFile(java.lang.String filename)

printAll

public HDF5SummaryPlugin printAll(java.lang.Boolean value)

taxaCount

public HDF5SummaryPlugin taxaCount(java.lang.Boolean value)

taxaNames

public HDF5SummaryPlugin taxaNames(java.lang.Boolean value)

siteCount

public HDF5SummaryPlugin siteCount(java.lang.Boolean value)

siteNames

public HDF5SummaryPlugin siteNames(java.lang.Boolean value)

hasDepth

public HDF5SummaryPlugin hasDepth(java.lang.Boolean value)

rawData

public HDF5SummaryPlugin rawData(java.lang.Boolean value)

inputFile

public java.lang.String inputFile()

outputFile

public java.lang.String outputFile()

printAll

public java.lang.Boolean printAll()

taxaCount

public java.lang.Boolean taxaCount()

taxaNames

public java.lang.Boolean taxaNames()

siteCount

public java.lang.Boolean siteCount()

siteNames

public java.lang.Boolean siteNames()

tagCount

public java.lang.Boolean tagCount()

tagSeqs

public java.lang.Boolean tagSeqs()

hasDepth

public java.lang.Boolean hasDepth()

rawData

public java.lang.Boolean rawData()

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()