net.maizegenetics.analysis.data

Class MaskGenotypePlugin

AbstractPlugin

net.maizegenetics.analysis.data.MaskGenotypePlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class MaskGenotypePlugin
extends AbstractPlugin

The purpose of this class is to mask (make UNKNOWN) a portion of the genotypes of the given GenotypeTable. The resulting GenotypeTable will be the same except some genotypes will have been changed to Unknown.

Constructor Detail

MaskGenotypePlugin

public MaskGenotypePlugin(java.awt.Frame parentFrame,
                          boolean isInteractive)

Method Detail

preProcessParameters

protected void preProcessParameters(DataSet input)

processData

public DataSet processData(DataSet input)

runPlugin

public GenotypeTable runPlugin(DataSet input)

Convenience method to run plugin with one return object.

percentageMasked

public java.lang.Double percentageMasked()

Percentage of genotypes to mask.

Returns:

org.jetbrains.dokka.NodeRenderContent@3a05fc7a: Percentage Masked

percentageMasked

public MaskGenotypePlugin percentageMasked(java.lang.Double value)

Set Percentage Masked. Percentage of genotypes to mask.

Parameters:

value - Percentage Masked

Returns:

org.jetbrains.dokka.NodeRenderContent@13dd5039: this plugin

minDepth

public java.lang.Integer minDepth()

Minimum depth required before masking.

Returns:

org.jetbrains.dokka.NodeRenderContent@3c5feabd: Min Depth

minDepth

public MaskGenotypePlugin minDepth(java.lang.Integer value)

Set Min Depth. Minimum depth required before masking.

Parameters:

value - Min Depth

Returns:

org.jetbrains.dokka.NodeRenderContent@7884a0e2: this plugin

getToolTipText

public java.lang.String getToolTipText()

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()