net.maizegenetics.analysis.data

Class MeanR2FromLDPlugin

AbstractPlugin

net.maizegenetics.analysis.data.MeanR2FromLDPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class MeanR2FromLDPlugin
extends AbstractPlugin

Constructor Detail

MeanR2FromLDPlugin

public MeanR2FromLDPlugin(@Nullable
                          java.awt.Frame parentFrame,
                          boolean isInteractive)

MeanR2FromLDPlugin

public MeanR2FromLDPlugin()

Method Detail

processData

@Nullable
public DataSet processData(@Nullable
                                     DataSet input)

intervalMap

@NotNull
public com.google.common.collect.RangeMap<net.maizegenetics.dna.map.Position,net.maizegenetics.analysis.data.MeanR2FromLDPlugin.AccumulateR2> intervalMap(@NotNull
                                                                                                                                                                   java.lang.String intervalFile)

getIcon

@Nullable
public javax.swing.ImageIcon getIcon()

getButtonName

@NotNull
public java.lang.String getButtonName()

getToolTipText

@NotNull
public java.lang.String getToolTipText()

intervalFile

@NotNull
public java.lang.String intervalFile()

Interval File.

Returns:

Intervals

intervalFile

@NotNull
public MeanR2FromLDPlugin intervalFile(@NotNull
                                                java.lang.String value)

Set Intervals. Interval File.

Parameters:

value - Intervals

Returns:

this plugin

ldResultFile

@NotNull
public java.lang.String ldResultFile()

LD Output File.

Returns:

Ld Result File

ldResultFile

@NotNull
public MeanR2FromLDPlugin ldResultFile(@NotNull
                                                java.lang.String value)

Set Ld Result File. LD Output File.

Parameters:

value - Ld Result File

Returns:

this plugin

output

@NotNull
public java.lang.String output()

Output Mean R2 Summary.

Returns:

Output

output

@NotNull
public MeanR2FromLDPlugin output(@NotNull
                                          java.lang.String value)

Set Output. Output Mean R2 Summary.

Parameters:

value - Output

Returns:

this plugin