net.maizegenetics.analysis.data

Class PlinkLoadPlugin

AbstractPlugin

net.maizegenetics.analysis.data.PlinkLoadPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class PlinkLoadPlugin
extends AbstractPlugin

Constructor Detail

PlinkLoadPlugin

public PlinkLoadPlugin(java.awt.Frame parentFrame,
                       boolean isInteractive)

Creates a new instance of PlinkLoadPlugin

Method Detail

processData

public DataSet processData(DataSet input)

runPlugin

public GenotypeTable runPlugin(DataSet input)

Convenience method to run plugin with one return object.

pedFile

public java.lang.String pedFile()

Ped File

Returns:

org.jetbrains.dokka.NodeRenderContent@2f07d1a4: Ped File

pedFile

public PlinkLoadPlugin pedFile(java.lang.String value)

Set Ped File. Ped File

Parameters:

value - Ped File

Returns:

org.jetbrains.dokka.NodeRenderContent@36a9763f: this plugin

mapFile

public java.lang.String mapFile()

Map File

Returns:

org.jetbrains.dokka.NodeRenderContent@5d3bad0d: Map File

mapFile

public PlinkLoadPlugin mapFile(java.lang.String value)

Set Map File. Map File

Parameters:

value - Map File

Returns:

org.jetbrains.dokka.NodeRenderContent@75357f12: this plugin

sortPositions

public java.lang.Boolean sortPositions()

Whether to sort genotype positions.

Returns:

org.jetbrains.dokka.NodeRenderContent@64ae1ae1: Sort Positions

sortPositions

public PlinkLoadPlugin sortPositions(java.lang.Boolean value)

Set Sort Positions. Whether to sort genotype positions.

Parameters:

value - Sort Positions

Returns:

org.jetbrains.dokka.NodeRenderContent@194b90c5: this plugin

getIcon

public javax.swing.ImageIcon getIcon()

Icon for this plugin to be used in buttons, etc.

Returns:

org.jetbrains.dokka.NodeRenderContent@19980524: ImageIcon

getButtonName

public java.lang.String getButtonName()

Button name for this plugin to be used in buttons, etc.

Returns:

org.jetbrains.dokka.NodeRenderContent@470b34ea: String

getToolTipText

public java.lang.String getToolTipText()

Tool Tip Text for this plugin

Returns:

org.jetbrains.dokka.NodeRenderContent@53e647f8: String