net.maizegenetics.analysis.data

Class SplitHDF5ByChromosomePlugin

AbstractPlugin

net.maizegenetics.analysis.data.SplitHDF5ByChromosomePlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class SplitHDF5ByChromosomePlugin
extends AbstractPlugin

Constructor Detail

SplitHDF5ByChromosomePlugin

public SplitHDF5ByChromosomePlugin()

SplitHDF5ByChromosomePlugin

public SplitHDF5ByChromosomePlugin(java.awt.Frame parentFrame,
                                   boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

inputHDF5GenotypeFile

public java.lang.String inputHDF5GenotypeFile()

Input HDF5 genotype (*.h5) file to be split by chromosome. The output files will be named *_chr#.h5 (where # = chromosome number)

Returns:

org.jetbrains.dokka.NodeRenderContent@6d484341: Input HDF5 Genotype File

inputHDF5GenotypeFile

public SplitHDF5ByChromosomePlugin inputHDF5GenotypeFile(java.lang.String value)

Set Input HDF5 Genotype File. Input HDF5 genotype (*.h5) file to be split by chromosome. The output files will be named *_chr#.h5 (where # = chromosome number)

Parameters:

value - Input HDF5 Genotype File

Returns:

org.jetbrains.dokka.NodeRenderContent@42ff0c2: this plugin

ignoreDepth

public java.lang.Boolean ignoreDepth()

If genotypic depth information is present in the input file, ignore it (i.e., do not write depth information to the output files). Default: keep depth.

Returns:

org.jetbrains.dokka.NodeRenderContent@5283724f: Ignore Depth

ignoreDepth

public SplitHDF5ByChromosomePlugin ignoreDepth(java.lang.Boolean value)

Set Ignore Depth. If genotypic depth information is present in the input file, ignore it (i.e., do not write depth information to the output files). Default: keep depth.

Parameters:

value - Ignore Depth

Returns:

org.jetbrains.dokka.NodeRenderContent@27147d82: this plugin