net.maizegenetics.analysis.distance

Class DominanceRelationshipMatrix

net.maizegenetics.analysis.distance.DominanceRelationshipMatrix

public class DominanceRelationshipMatrix

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored. http://www.genetics.org/content/198/4/1759.abstract

Method Detail

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype)

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored.

Parameters:

genotype - Genotype Table used to compute dominance relationship

Returns:

org.jetbrains.dokka.NodeRenderContent@67418d02: Dominance Relationship Matrix

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype,
                                         int maxAlleles,
                                         net.maizegenetics.analysis.distance.KinshipPlugin.ALGORITHM_VARIATION variation,
                                         ProgressListener listener)

Compute Dominance Relationship Matrix for all pairs of taxa. Missing sites are ignored.

Parameters:

genotype - Genotype Table used to compute dominance relationship

maxAlleles -

variation -

listener - progress listener

Returns:

org.jetbrains.dokka.NodeRenderContent@7e0776c0: Dominance Relationship Matrix