net.maizegenetics.analysis.distance

Class IBSDistanceMatrix2Alleles

net.maizegenetics.analysis.distance.IBSDistanceMatrix2Alleles

public class IBSDistanceMatrix2Alleles

Method Detail

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype)

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype,
                                         ProgressListener listener)

getInstance

public static DistanceMatrix getInstance(GenotypeTable genotype,
                                         int minSiteComp,
                                         boolean trueIBS,
                                         ProgressListener listener)

computeHetDistances

public static kotlin.Array[] computeHetDistances(kotlin.Array[] first,
                                                 kotlin.Array[] second,
                                                 int minSitesComp)

fireProgress

protected static void fireProgress(int percent,
                                   ProgressListener listener)