net.maizegenetics.analysis.filter

Class FilterTaxaBuilderPlugin

AbstractPlugin

net.maizegenetics.analysis.filter.FilterTaxaBuilderPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class FilterTaxaBuilderPlugin
extends AbstractPlugin

Constructor Detail

FilterTaxaBuilderPlugin

public FilterTaxaBuilderPlugin(java.awt.Frame parentFrame,
                               boolean isInteractive)

FilterTaxaBuilderPlugin

public FilterTaxaBuilderPlugin()

Method Detail

preProcessParameters

protected void preProcessParameters(DataSet input)

processData

public DataSet processData(DataSet input)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

pluginUserManualURL

public java.lang.String pluginUserManualURL()

build

public FilterTaxa build()

useFilterValues

public FilterTaxaBuilderPlugin useFilterValues(FilterTaxa filter)

runPlugin

public FilterTaxa runPlugin()

Convenience method to run plugin with one return object.

runPlugin

public GenotypeTable runPlugin(DataSet input)

runPlugin

public GenotypeTable runPlugin(GenotypeTable input)

filterName

public java.lang.String filterName()

Filter Name

Returns:

org.jetbrains.dokka.NodeRenderContent@23d25e8c: Filter Name

filterName

public FilterTaxaBuilderPlugin filterName(java.lang.String value)

Set Filter Name. Filter Name

Parameters:

value - Filter Name

Returns:

org.jetbrains.dokka.NodeRenderContent@134f0e71: this plugin

minNotMissing

public java.lang.Double minNotMissing()

Min Proportion of Sites Present

Returns:

org.jetbrains.dokka.NodeRenderContent@f06f1bf: Min Proportion of Sites Present

minNotMissing

public FilterTaxaBuilderPlugin minNotMissing(java.lang.Double value)

Set Min Proportion of Sites Present. Min Proportion of Sites Present

Parameters:

value - Min Proportion of Sites Present

Returns:

org.jetbrains.dokka.NodeRenderContent@6323e3c1: this plugin

minHeterozygous

public java.lang.Double minHeterozygous()

Min Heterozygous Proportion

Returns:

org.jetbrains.dokka.NodeRenderContent@5234e717: Min Heterozygous Proportion

minHeterozygous

public FilterTaxaBuilderPlugin minHeterozygous(java.lang.Double value)

Set Min Heterozygous Proportion. Min Heterozygous Proportion

Parameters:

value - Min Heterozygous Proportion

Returns:

org.jetbrains.dokka.NodeRenderContent@39e347a6: this plugin

maxHeterozygous

public java.lang.Double maxHeterozygous()

Max Heterozygous Proportion

Returns:

org.jetbrains.dokka.NodeRenderContent@1d0c22c: Max Heterozygous Proportion

maxHeterozygous

public FilterTaxaBuilderPlugin maxHeterozygous(java.lang.Double value)

Set Max Heterozygous Proportion. Max Heterozygous Proportion

Parameters:

value - Max Heterozygous Proportion

Returns:

org.jetbrains.dokka.NodeRenderContent@7d11043c: this plugin

includeTaxa

public java.lang.Boolean includeTaxa()

Include Taxa

Returns:

org.jetbrains.dokka.NodeRenderContent@86858d6: Include Taxa

includeTaxa

public FilterTaxaBuilderPlugin includeTaxa(java.lang.Boolean value)

Set Include Taxa.

Parameters:

value - Include Taxa

Returns:

org.jetbrains.dokka.NodeRenderContent@2b95f00a: this plugin

taxaList

public TaxaList taxaList()

Taxa List

Returns:

org.jetbrains.dokka.NodeRenderContent@2c5396f6: Position List

taxaList

public FilterTaxaBuilderPlugin taxaList(TaxaList value)

Set Taxa List.

Parameters:

value - Taxa List

Returns:

org.jetbrains.dokka.NodeRenderContent@599647a4: this plugin

taxaList

public FilterTaxaBuilderPlugin taxaList(java.lang.String value)