net.maizegenetics.analysis.gbs

Class ModifyTBTHDF5Plugin

AbstractPlugin

net.maizegenetics.analysis.gbs.ModifyTBTHDF5Plugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class ModifyTBTHDF5Plugin
extends AbstractPlugin

This pipeline modifies TagsByTaxa HDF5 file with data organized by taxa. It can: 1. Create an empty TBT. 2. Merge two TBT 3. Combined similarly named taxa 4. Pivot a taxa TBT to a tag TBT

Constructor Detail

ModifyTBTHDF5Plugin

public ModifyTBTHDF5Plugin()

ModifyTBTHDF5Plugin

public ModifyTBTHDF5Plugin(java.awt.Frame parentFrame,
                           boolean isInteractive)

Method Detail

postProcessParameters

protected void postProcessParameters()

processData

public DataSet processData(DataSet input)

targetTBTHDF5File

public java.lang.String targetTBTHDF5File()

targetTBTHDF5File

public ModifyTBTHDF5Plugin targetTBTHDF5File(java.lang.String value)

additionTaxaFile

public java.lang.String additionTaxaFile()

additionTaxaFile

public ModifyTBTHDF5Plugin additionTaxaFile(java.lang.String value)

mergeTaxa

public java.lang.Boolean mergeTaxa()

mergeTaxa

public ModifyTBTHDF5Plugin mergeTaxa(java.lang.Boolean value)

pivotTBTHDF5File

public java.lang.String pivotTBTHDF5File()

pivotTBTHDF5File

public ModifyTBTHDF5Plugin pivotTBTHDF5File(java.lang.String value)

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()