net.maizegenetics.analysis.gbs

Class ShortReadBarcodeResult

net.maizegenetics.analysis.gbs.ShortReadBarcodeResult

public class ShortReadBarcodeResult

Container class for returning the results of parsed barcoded sequencing read. The length of read is in short. Max length is 32767 bp.

Field Detail

unprocessedSequence

public java.lang.String unprocessedSequence

processedSequence

public java.lang.String processedSequence

paddedSequence

public java.lang.String paddedSequence

Constructor Detail

ShortReadBarcodeResult

public ShortReadBarcodeResult(kotlin.Array[] read,
                              short length,
                              java.lang.String taxon)

ShortReadBarcodeResult

public ShortReadBarcodeResult(java.lang.String sequence)

Construct object with genomic sequence

Parameters:

sequence -

Method Detail

toString

public java.lang.String toString()

getLength

public short getLength()

Return the length of the genomic sequence

Returns:

org.jetbrains.dokka.NodeRenderContent@1f8566db: Length of the genomic sequence

getRead

public kotlin.Array[] getRead()

getTaxonName

public java.lang.String getTaxonName()