net.maizegenetics.analysis.gbs

Class UNetworkFilter

net.maizegenetics.analysis.gbs.UNetworkFilter

public class UNetworkFilter

Constructor Detail

UNetworkFilter

public UNetworkFilter(java.lang.String mergedTagCountFileS,
                      double etr,
                      java.lang.String tagPairFileS)

Method Detail

getTagPair

public void getTagPair(TagCounts tc,
                       double etr)

errorFilter

public int errorFilter(TagCounts rc,
                       double errorRate,
                       int queryIndex,
                       java.lang.Integer[] hitIndexArray)

reciprocate

public void reciprocate()

writeTagPair

public void writeTagPair(TagCounts tc,
                         java.lang.String outfileS)

screenPrintTps

public void screenPrintTps()

screenPrint

public void screenPrint(TagCounts rc)