net.maizegenetics.analysis.gbs

Class UTagCountToTagPairPlugin

AbstractPlugin

net.maizegenetics.analysis.gbs.UTagCountToTagPairPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class UTagCountToTagPairPlugin
extends AbstractPlugin

Constructor Detail

UTagCountToTagPairPlugin

public UTagCountToTagPairPlugin()

UTagCountToTagPairPlugin

public UTagCountToTagPairPlugin(java.awt.Frame parentFrame,
                                boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

pluginDescription

public java.lang.String pluginDescription()

getCitation

public java.lang.String getCitation()

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

errorTolerance

public java.lang.Double errorTolerance()

What fraction of errors to tolerate when filtering by UNEAK

Returns:

org.jetbrains.dokka.NodeRenderContent@16b728c2: Error tolerance

errorTolerance

public UTagCountToTagPairPlugin errorTolerance(java.lang.Double value)

Set Error tolerance. What fraction of errors to tolerate when filtering by UNEAK

Parameters:

value - Error tolerance

Returns:

org.jetbrains.dokka.NodeRenderContent@2ea3be1b: this plugin

inputFile

public java.lang.String inputFile()

Input file of merged tag counts

Returns:

org.jetbrains.dokka.NodeRenderContent@3fed3a2b: Input file

inputFile

public UTagCountToTagPairPlugin inputFile(java.lang.String value)

Set Input file. Input file of merged tag counts

Parameters:

value - Input file

Returns:

org.jetbrains.dokka.NodeRenderContent@772dfa11: this plugin

outputFile

public java.lang.String outputFile()

Output file of matched tag pairs

Returns:

org.jetbrains.dokka.NodeRenderContent@58f33d0e: Output file

outputFile

public UTagCountToTagPairPlugin outputFile(java.lang.String value)

Set Output file. Output file of matched tag pairs

Parameters:

value - Output file

Returns:

org.jetbrains.dokka.NodeRenderContent@6b13036d: this plugin