net.maizegenetics.analysis.gbs

Class UTagPairToTOPMPlugin

AbstractPlugin

net.maizegenetics.analysis.gbs.UTagPairToTOPMPlugin

All Implemented Interfaces:

Plugin, PluginListener, ProgressListener

public class UTagPairToTOPMPlugin
extends AbstractPlugin

Constructor Detail

UTagPairToTOPMPlugin

public UTagPairToTOPMPlugin()

UTagPairToTOPMPlugin

public UTagPairToTOPMPlugin(java.awt.Frame parentFrame,
                            boolean isInteractive)

Method Detail

processData

public DataSet processData(DataSet input)

postProcessParameters

protected void postProcessParameters()

pluginDescription

public java.lang.String pluginDescription()

getIcon

public javax.swing.ImageIcon getIcon()

getButtonName

public java.lang.String getButtonName()

getToolTipText

public java.lang.String getToolTipText()

startChromosome

public java.lang.Integer startChromosome()

Chromosome to start numbering at

Returns:

org.jetbrains.dokka.NodeRenderContent@51d13186: Start chromosome

startChromosome

public UTagPairToTOPMPlugin startChromosome(java.lang.Integer value)

Set Start chromosome. Chromosome to start numbering at

Parameters:

value - Start chromosome

Returns:

org.jetbrains.dokka.NodeRenderContent@58829b6f: this plugin

padDistance

public java.lang.Integer padDistance()

Distance to pad between each tag pair

Returns:

org.jetbrains.dokka.NodeRenderContent@bf234d: Pad distance

padDistance

public UTagPairToTOPMPlugin padDistance(java.lang.Integer value)

Set Pad distance. Distance to pad between each tag pair

Parameters:

value - Pad distance

Returns:

org.jetbrains.dokka.NodeRenderContent@3f460706: this plugin

input

public java.lang.String input()

Input file of matched tag pairs

Returns:

org.jetbrains.dokka.NodeRenderContent@67c34c69: Input

input

public UTagPairToTOPMPlugin input(java.lang.String value)

Set Input. Input file of matched tag pairs

Parameters:

value - Input

Returns:

org.jetbrains.dokka.NodeRenderContent@2bd6fa1d: this plugin

toText

public java.lang.String toText()

File to output TOPM in text format

Returns:

org.jetbrains.dokka.NodeRenderContent@520a1161: To Text

toText

public UTagPairToTOPMPlugin toText(java.lang.String value)

Set To Text. File to output TOPM in text format

Parameters:

value - To Text

Returns:

org.jetbrains.dokka.NodeRenderContent@5dfb5211: this plugin

toBinary

public java.lang.String toBinary()

File to output TOPM in binary format

Returns:

org.jetbrains.dokka.NodeRenderContent@2026edc3: To Binary

toBinary

public UTagPairToTOPMPlugin toBinary(java.lang.String value)

Set To Binary. File to output TOPM in binary format

Parameters:

value - To Binary

Returns:

org.jetbrains.dokka.NodeRenderContent@3cbcedc8: this plugin