net.maizegenetics.analysis.gbs.neobio

Interfaces

• Matrix

Classes

• AlignmentBlock
• BasicScoringScheme
• CharSequence
• CrochemoreLandauZivUkelson
• CrochemoreLandauZivUkelsonGlobalAlignment
• CrochemoreLandauZivUkelsonLocalAlignment
• Factor
• FactorSequence
• LocalAlignmentBlock
• NeedlemanWunsch
• OutMatrix
• PairwiseAlignment
• PairwiseAlignmentAlgorithm
• ScoringMatrix
• ScoringScheme
• Smawk
• SmithWaterman
• Trie

Exceptions

• IncompatibleScoringSchemeException
• InvalidScoringMatrixException
• InvalidSequenceException