Hierarchy For Package net.maizegenetics.analysis.gbs.neobio

Package Hierarchies:

• All Packages

Class Hierarchy

• net.maizegenetics.analysis.gbs.neobio.PairwiseAlignmentAlgorithm
  • net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelson
    • net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelsonGlobalAlignment
    • net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelsonLocalAlignment
  • net.maizegenetics.analysis.gbs.neobio.NeedlemanWunsch
  • net.maizegenetics.analysis.gbs.neobio.SmithWaterman
• net.maizegenetics.analysis.gbs.neobio.OutMatrix (implements net.maizegenetics.analysis.gbs.neobio.Matrix)
• net.maizegenetics.analysis.gbs.neobio.ScoringScheme
  • net.maizegenetics.analysis.gbs.neobio.BasicScoringScheme
  • net.maizegenetics.analysis.gbs.neobio.ScoringMatrix
• net.maizegenetics.analysis.gbs.neobio.Trie
• net.maizegenetics.analysis.gbs.neobio.CharSequence
• net.maizegenetics.analysis.gbs.neobio.FactorSequence
• net.maizegenetics.analysis.gbs.neobio.AlignmentBlock
  • net.maizegenetics.analysis.gbs.neobio.LocalAlignmentBlock
• net.maizegenetics.analysis.gbs.neobio.Factor
• net.maizegenetics.analysis.gbs.neobio.PairwiseAlignment
• net.maizegenetics.analysis.gbs.neobio.Smawk

Interface Hierarchy

• net.maizegenetics.analysis.gbs.neobio.Matrix