net.maizegenetics.analysis.gbs

Classes

• AnnotateTOPM
• AnnotateTOPMwSAMPlugin
• Barcode
• BinaryToTextPlugin
• Clusters
• CompareGenosBetweenHapMapFilesPlugin
• ContigPETagCountPlugin
• DiscoverySNPCallerPlugin
• FastqToPETagCountPlugin
• FastqToTBTPlugin
• FastqToTagCountPlugin
• KeepSpecifiedReadsinFastqPlugin
• KeepSpecifiedSitesInTOPMPlugin
• KmerToTBTPlugin
• KmerToTagCountPlugin
• MergeDuplicateSNPsPlugin
• MergeMultipleTOPMPlugin
• MergeMultipleTagCountPlugin
• MergePETagCountPlugin
• MergeTagsByTaxaFilesByRowPlugin
• MergeTagsByTaxaFilesPlugin
• ModifyTBTHDF5Plugin
• PEParseBarcodeRead
• PEReadBarcodeResult
• ParseBarcodeRead
• PolymorphismFinder
• ProductionPipeline
• ProductionPipelineMain
• ProductionSNPCallerPlugin
• QseqToPETagCountPlugin
• QseqToTBTPlugin
• QseqToTagCountPlugin
• ReadBarcodeResult
• SAMConverterPlugin
• SAMWGMapConverterPlugin
• SNPLogging
• SeqToTBTHDF5Plugin
• ShortReadBarcodeResult
• SimpleGenotypeSBit
• SmithWaterman
• TOPMSummaryPlugin
• TagAgainstAnchor
• TagAgainstAnchorHypothesis
• TagAgainstAnchorPlugin
• TagBlockPosition
• TagCountToFastqPlugin
• TagMatchFinder
• TerryPipelines
• TextToBinaryPlugin
• UNetworkFilter
• UTagCountToTagPairPlugin
• UTagPairFinder
• UTagPairToTOPMPlugin