net.maizegenetics.analysis.gbs.v2

Class EnzymeList

net.maizegenetics.analysis.gbs.v2.EnzymeList

public class EnzymeList

This class contains a list of all the enzymes supported for GBS.

Field Detail

defaultCache

public static EnzymeList defaultCache

This is the application level default that will initiate using the EnzymeList default constructor.

Constructor Detail

EnzymeList

public EnzymeList()

Looks for "enzymes.ini" config file in the lib path. Loads default Enzymes if not found

EnzymeList

public EnzymeList(java.io.File iniFile)

Custom Config file

Parameters:

iniFile -

Method Detail

getEnzyme

public net.maizegenetics.analysis.gbs.v2.EnzymeList.Enzyme getEnzyme(java.lang.String key)

Get the Enzyme by the section name
Replaces the previous new GBSEnzyme(String enzyme)

Parameters:

key - The section name specified the enzyme configuration file

Returns:

org.jetbrains.dokka.NodeRenderContent@140abada: Enzyme

printEnzymes

public void printEnzymes(java.io.PrintStream print)

Prints the list of Enzymes loaded in this object

Parameters:

print -

Throws:

IOException

main

public static void main(java.lang.String[] args)

Prints default enzyme list and exists

Parameters:

args -

Throws:

IOException