net.maizegenetics.analysis.imputation

Class CrossProgenyEmissionMatrix

EmissionProbability

net.maizegenetics.analysis.imputation.CrossProgenyEmissionMatrix

public class CrossProgenyEmissionMatrix
extends EmissionProbability

Constructor Detail

CrossProgenyEmissionMatrix

public CrossProgenyEmissionMatrix(kotlin.Array[] hap,
                                  GenotypeTable originalGenotypes,
                                  int taxonIndex,
                                  kotlin.Array[] siteIndices)

Parameters:

hap - parent haplotypes

CrossProgenyEmissionMatrix

public CrossProgenyEmissionMatrix(kotlin.Array[] hapProbs,
                                  GenotypeTable originalGenotypes,
                                  kotlin.Array[] stateByObs,
                                  int taxonIndex,
                                  kotlin.Array[] siteIndices)

Method Detail

getProbObsGivenState

public double getProbObsGivenState(int state,
                                   int obs)

getProbObsGivenState

public double getProbObsGivenState(int state,
                                   int obs,
                                   int site)